Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00707 ATGGCGGATACGACGAAGCTTTCCTGGACAAGAAGTAATTGTGTCGTCGGAAAGGGCTCCTTTGGAACTGTGACTGTCGGGATTCGGAATTCGGACGGTCGGGTTTTTGCGGTCAAGTCTGTCGAACAGAGTGTTGGATTCCGGCGGCAGATTGAGTGTTTAGAGAATGAAATTCGGATTCTTAGATCGTTGAATTCGCCGTACGTGGTGGGGTTTCTTGGTGATGATGTTTCCGAGGAGACGCCGACGACGTCGCTTCGGAATTTGCACATGGAGTATTTGCCAGGTGGCACTGTTGCCGATGATCCAATCGGTACCGGCGATGAGATGGTTCTACGGGCGAGGACACGGTGTATTGTTTCGGCTTTGAGTTTTGTTCATTCCAAAGGAATCGTTCACTGTGATGTTAAAGGGCGGAATGTTTTGATTGGATTGAATCCAAGTTTTGTTAAATTGGCCGACTTCGGCTCTGCAATTGAAATCGGCGACGGCGACACGTGTCGATGTTCGGGGGCGCCACGAGGGAGTCCGCTGTGGATGGCGCCGGAAGTGGTTCGAGGGGAATATCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATTGAAATGGTCACCGGAAAACCGGCATGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGGTTTTCCGATGACTTGCCGGAGTTTCCGACACGGTTGTCGGGACTCGGACGGGATTTTCTCCGGAAGTGTCTTGTAAGAGATCCGAAAGAACGGTGGAGCTGTGATCGGCTACTGCAGCATCCATTTTTAGCGACGGTGGCAGCCTCGCCGCAAATCGCCATCGAGAATTCCCCCCGGTGCGTGCTCGACTGGGTCAACGCCGATTTCGACGATAACGAAGATGAAGAAATCCCCTTCTCCGGCGAAACCTCCGGCGCCGGAAGCCGGGAAAGCGAGATCTCCGGCAAGTGCAGAATAGGGAAATTGAGTACGAGTGAATGGCCGAACTGGGAATCGGACGGTTGGTCGTCGGCGAGAAGGTTTACAGCGACGCCGGTAACCTGTGAAGAAGAAGGAGTAGGGGTAAATTGGGAATATGGGAATTTGAGAGGGGTAGAAATGGAAATGGAGGGAACAAGTTCGGAATATTCGGAGTTTGTAAAGCACAGTAACGAAGAATTGGGAGACGCCCTTTCAAATCCTGGCGGTCTGGAGACTCCGGAGCGGCCACGTAATAATTGCGGCAGCGGCAGCGGCGGTGATGGTGGCGGTGGCGGTGGATTAAACTCGCAGCGAGAAGATGAGGAGGCTCCGGCGGCAGAGGATGAAGACACTGGAGCTCAAGTCGCCCCAATCGTCAAGTTGGAAGCGGTAGCCGTCACTACTGGTGAAGAAAACGAGGACGTTATTCTTGATCTAAAGTCCAAACTCTACCGATTTGATAAAGAAGGAAACCAATGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTTTTGAAACACAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGGCAATCTAAGACCCTCAAGATCTGCGCTAACCATCTTGTTCTTCCATCAATGTCGGTTCAAGAACACGCTGGTAATGATAAGTCTTGTGTGTGGCATGCGCCTGACTATGCGGATGGTGAATTGAAAGATGAGCTGTTTTGCATCAGATTCCCATCTATTGAGAGTTTGAAATCACAAAACAGTAGAAATTCCTGGACTTGCATGACCATCATGCTTGTGATCCATCCATCCAGCATAGATAGAGACTGCAAAACCTTCATGGAGACATTCCAAGAAGTTGCAGAGTCCCAAACCAAGAAAGAGGAGAATGAAGATGCATCTGCAGCAGCTGATCAACTTGAAAAATTAAAGGTTGAAGACAAAAAGAAGGAAGGTGAAGATAAAGCCGAAGACAAAGCTGAAGATAAAGCTGCAGAGAAAGAGTAA 1953 50.18 MADTTKLSWTRSNCVVGKGSFGTVTVGIRNSDGRVFAVKSVEQSVGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSEETPTTSLRNLHMEYLPGGTVADDPIGTGDEMVLRARTRCIVSALSFVHSKGIVHCDVKGRNVLIGLNPSFVKLADFGSAIEIGDGDTCRCSGAPRGSPLWMAPEVVRGEYQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSGLGRDFLRKCLVRDPKERWSCDRLLQHPFLATVAASPQIAIENSPRCVLDWVNADFDDNEDEEIPFSGETSGAGSRESEISGKCRIGKLSTSEWPNWESDGWSSARRFTATPVTCEEEGVGVNWEYGNLRGVEMEMEGTSSEYSEFVKHSNEELGDALSNPGGLETPERPRNNCGSGSGGDGGGGGGLNSQREDEEAPAAEDEDTGAQVAPIVKLEAVAVTTGEENEDVILDLKSKLYRFDKEGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHAPDYADGELKDELFCIRFPSIESLKSQNSRNSWTCMTIMLVIHPSSIDRDCKTFMETFQEVAESQTKKEENEDASAAADQLEKLKVEDKKKEGEDKAEDKAEDKAAEKE 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3630258 3636181 + CmoCh01G007070.1 Cmo01g00707 374190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00707 650 CDD RanBD_RanBP1 444 563 IPR045256 GO:0006913
Cmo01g00707 650 SMART serkin_6 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00707 650 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Cmo01g00707 650 ProSiteProfiles Protein kinase domain profile. 10 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00707 650 Coils Coil 605 632 - -
Cmo01g00707 650 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Cmo01g00707 650 Pfam RanBP1 domain 458 564 IPR000156 GO:0046907
Cmo01g00707 650 SMART ranbd_3 447 574 IPR000156 GO:0046907
Cmo01g00707 650 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 4 363 - -
Cmo01g00707 650 MobiDBLite consensus disorder prediction 391 446 - -
Cmo01g00707 650 CDD STKc_MAPKKK 8 268 - -
Cmo01g00707 650 SUPERFAMILY PH domain-like 449 566 - -
Cmo01g00707 650 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00707 650 MobiDBLite consensus disorder prediction 604 650 - -
Cmo01g00707 650 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 363 - -
Cmo01g00707 650 Gene3D - 430 576 IPR011993 -
Cmo01g00707 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cmo01g00707 650 ProSiteProfiles Ran binding domain type 1 profile. 446 563 IPR000156 GO:0046907
Cmo01g00707 650 Gene3D Transferase(Phosphotransferase) domain 1 7 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00707 Cmo-Chr1:3630258 Cmo13g00045 Cmo-Chr13:275297 2.16E-100 dispersed
Cmo17g00787 Cmo-Chr17:7582017 Cmo01g00707 Cmo-Chr1:3630258 8.18E-07 dispersed
Cmo01g00707 Cmo-Chr1:3630258 Cmo01g00708 Cmo-Chr1:3636546 7.77E-98 tandem
Cmo01g00707 Cmo-Chr1:3630258 Cmo13g00043 Cmo-Chr13:269044 3.79E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74031 PF00069 Pkinase 6.50E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00707 - - cmo:103497226 622.083