Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00737 ATGGCCTCCTCTTCCGGGAGCTTAGATACCTCTGCAAATTCCCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCCGACCTTCTCGCCGCCGGCAGCAACGATCTTCCATCCTCCGCCGCTGCCCATGGAGCTCACCGAGGCTCTGGAACTGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTGCCTCTGTCGCCACCTACTCTGTTTCCTTCTCCCCTGTTCTCCATTCCTCCTGGTTTGAGCCCCACCGAGCTTCTTGATTCGCCGGTTCTCCTCAGTGCTTCTTATGTTCTTCCGTCGCCGACCACCGGGAGTTTCCCGTCGCAGTCGTTGAATTGGAAGAACAATTCTGGGTATAATCAACAGAGCATCAAAGAAGAGAACAAATTCTTGTCGGAATTCTCATTTCTAAATCAATCGTCTCAGCCGCCGCCGACATCTTTTCAGCCAGCTCCGACGACTGAGGGAAAGAAACAGGACGGATCGATGCAGAGCTTCTCACCGGAATATGGGATTGTTCAAAACCAGAGCCGGAACAACGCCGGCAGGGATTACCCTCAACAATCTCAGACGGTGAATCGGAGATCCGACGACGGTTACAACTGGAGAAAATACGGCCAAAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCACAGTCAACGAGGAAGTCATCGTTGTCGTCCGCCGTGTCGGCGTCAAATCCAGCCGCCAGCGATATGGCGGAGCAGTCATTCACAACCCAAGGAAGCAGTCAATTCGACGGCGTTGCAACGCCGGAGAATTCATTGATCTCGGTCGGCGACGATGAATTCGATCGGAGCTCTCAGAGGAGCAAATCTGCCGGAGACGATAACGACGAGGACGAACCAGAGGCCAAGAGGAGAAGGGATGGTGATAACAGTGAAGGGATTTCAGCTGCAGGTAACCGGACCGTGAGAGAGCCGAGAGTCGTTGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGCCAAAAAGTGGTTAAGGGAAACCCAAATCCAAGAATGAGAAACAGAAATGACATATATTTCATAATTGATTGCAGGAGTTATTACAAATGCACAAATCCGGGATGTCCGGTAAGAAAGCATGTAGAGAGAGCCTCGCATGATCTAAGAGCGGTGATCACAACCTACGAAGGCAAACACAACCACGAAGTCCCACCGGCACGCGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTTCCCAGCAATGACCCGTCGGCCACCGCAATTCGCCCATTGGCGGTGACCCATCAAGCAAACAACGGCGCTGACAACAACAACGACAACCTTCTTCATGGTCTGAGACAAACACCATTCACACTGGAAATGGTGCAAAATTCTAATGGATTTTCATTCCCGGAATTTGGGAACTCCATGGGGATGGGATCCTACATGAATCCAACACAATCTAAAGACAGTTTGTTCGTTAGAGCAAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTGA 1668 50.48 MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLAAGSNDLPSSAAAHGAHRGSGTGVPKFKSLPPPSLPLSPPTLFPSPLFSIPPGLSPTELLDSPVLLSASYVLPSPTTGSFPSQSLNWKNNSGYNQQSIKEENKFLSEFSFLNQSSQPPPTSFQPAPTTEGKKQDGSMQSFSPEYGIVQNQSRNNAGRDYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRKSSLSSAVSASNPAASDMAEQSFTTQGSSQFDGVATPENSLISVGDDEFDRSSQRSKSAGDDNDEDEPEAKRRRDGDNSEGISAAGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRMRNRNDIYFIIDCRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHEVPPARGSGSHSLSRPFPSNDPSATAIRPLAVTHQANNGADNNNDNLLHGLRQTPFTLEMVQNSNGFSFPEFGNSMGMGSYMNPTQSKDSLFVRAKEEPRDHDMFIQSLLC 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3806759 3808921 - CmoCh01G007370.1 Cmo01g00737 374220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00737 555 MobiDBLite consensus disorder prediction 159 204 - -
Cmo01g00737 555 ProSiteProfiles WRKY domain profile. 368 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 MobiDBLite consensus disorder prediction 145 226 - -
Cmo01g00737 555 SMART WRKY_cls 373 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 SMART WRKY_cls 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 SUPERFAMILY WRKY DNA-binding domain 365 447 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 47 528 - -
Cmo01g00737 555 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 Pfam WRKY DNA -binding domain 374 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 Gene3D WRKY domain 358 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 Gene3D WRKY domain 191 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo01g00737 555 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 528 IPR044810 GO:0003700
Cmo01g00737 555 MobiDBLite consensus disorder prediction 439 469 - -
Cmo01g00737 555 MobiDBLite consensus disorder prediction 41 72 - -
Cmo01g00737 555 MobiDBLite consensus disorder prediction 259 304 - -
Cmo01g00737 555 MobiDBLite consensus disorder prediction 311 346 - -
Cmo01g00737 555 MobiDBLite consensus disorder prediction 254 360 - -
Cmo01g00737 555 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00737 Cmo-Chr1:3806759 Cmo16g01037 Cmo-Chr16:7226008 6.97E-93 dispersed
Cmo01g00737 Cmo-Chr1:3806759 Cmo13g00017 Cmo-Chr13:167081 0 wgd
Cmo01g00737 Cmo-Chr1:3806759 Cmo14g00029 Cmo-Chr14:153073 2.32E-111 wgd
Cmo01g00737 Cmo-Chr1:3806759 Cmo02g00711 Cmo-Chr2:4449430 5.51E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9051 PF03106 WRKY 1.60E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00737 K13424 - csv:101207158 786.178