Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00761 ATGCAAGATCCGGCGTCAAATCCCGATTCCTCCATCTCCAACAATGCTTCTACTCCCAATACTCATCTTCCGCCGCCGCCGCCGCCGCCCTCTTCTACCAGACCCCACCACCGCAGGGCCCACTCCGAACTCACATTTCGGTTCCCTGATGACATCATGGATCTCTCTTCCTCTGATCCCTTCACTGCCGGATCCGCCGCCCTCGCTTTGGACGAGATCGGATCTGAGGACGACCTCTTTTCCACCTACATTGATGTAGACAAGCTTGGCCCCGGCACTTCTTCTGCAGATCACACCGCTAACGCTGAACCTGAGAAGACTCCCAGACCGAGGCATAGATATAGCAACTCTGTTGATGGTTCCACCTCTACCAGTGTGTTTGGGGATGTACTGGACGCCAAGAAAGCTATGCCTCCTGATAAACTAGCTGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAGAGGATTTTGGCCAATCGACAGTCTGCTTCCCGTTCTAAAGAGAGGAAGGCACGATACATGCAGGAGCTCGAGCGCAAAGTTCAGACCCTTCAAACAGAGGCGACAACTCTTTCAGCTCAACTCGCACTGTTCCAGAGGGATACGACAGGTCTTAGTAGTGAAAATACAGAACTTAAGCTTCGGTTGCAGGCAATGGAGCAACAGGCTCATTTGCGGGATGCCTTGAATGAAGCACTAAAGAACGAAGTTGAGAGGCTCAAAGTAGCCACTGGAGAGACATCAGGCGCCTCCGATTCCTTCAACTTGGGGGGAATGCCTCATATGCCATATTTAGCATCCAGTTTCTTTCCCCTTCATCAGCAGCCAGGTTCTGCCGGCACCCACAACATGCTGCAGATGCCATTATACGGCCATTCCTCATCAAACATGTCAATACATCCTCTGCATCATCAGCTGAATTCACATCAATTCTCTGAGACCATGCAGAGTGATCCACTTGGGCGATTACAGGGTCTGGATATCAGCAGCAATGGATCTCCTCTGGTGAAATCAGAAGTCCCTTCTCTTTCTGCTAGTGAAAGTAGCGCCACATTTTGA 1059 51.18 MQDPASNPDSSISNNASTPNTHLPPPPPPPSSTRPHHRRAHSELTFRFPDDIMDLSSSDPFTAGSAALALDEIGSEDDLFSTYIDVDKLGPGTSSADHTANAEPEKTPRPRHRYSNSVDGSTSTSVFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSASRSKERKARYMQELERKVQTLQTEATTLSAQLALFQRDTTGLSSENTELKLRLQAMEQQAHLRDALNEALKNEVERLKVATGETSGASDSFNLGGMPHMPYLASSFFPLHQQPGSAGTHNMLQMPLYGHSSSNMSIHPLHHQLNSHQFSETMQSDPLGRLQGLDISSNGSPLVKSEVPSLSASESSATF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3928092 3931883 - CmoCh01G007610.1 Cmo01g00761 374244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00761 352 MobiDBLite consensus disorder prediction 91 121 - -
Cmo01g00761 352 Coils Coil 226 246 - -
Cmo01g00761 352 PANTHER ATBZIP TRANSCRIPTION FACTOR 7 349 - -
Cmo01g00761 352 Gene3D - 150 202 - -
Cmo01g00761 352 CDD bZIP_plant_RF2 152 201 IPR044759 GO:0003700|GO:0006355
Cmo01g00761 352 MobiDBLite consensus disorder prediction 320 352 - -
Cmo01g00761 352 MobiDBLite consensus disorder prediction 1 45 - -
Cmo01g00761 352 Coils Coil 167 194 - -
Cmo01g00761 352 Pfam bZIP transcription factor 151 207 IPR004827 GO:0003700|GO:0006355
Cmo01g00761 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 212 IPR004827 GO:0003700|GO:0006355
Cmo01g00761 352 MobiDBLite consensus disorder prediction 1 19 - -
Cmo01g00761 352 SMART brlzneu 147 211 IPR004827 GO:0003700|GO:0006355
Cmo01g00761 352 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 349 - -
Cmo01g00761 352 SUPERFAMILY Leucine zipper domain 151 202 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00761 Cmo02g00697 CCT
Cmo01g00761 Cmo20g00333 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00761 Cmo-Chr1:3928092 Cmo20g00333 Cmo-Chr20:1631748 1.45E-155 dispersed
Cmo01g00761 Cmo-Chr1:3928092 Cmo02g00697 Cmo-Chr2:4402783 8.41E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9052 PF00170 bZIP_1 1.30E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00761 - - vun:114193127 414.846