Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00761 | ATGCAAGATCCGGCGTCAAATCCCGATTCCTCCATCTCCAACAATGCTTCTACTCCCAATACTCATCTTCCGCCGCCGCCGCCGCCGCCCTCTTCTACCAGACCCCACCACCGCAGGGCCCACTCCGAACTCACATTTCGGTTCCCTGATGACATCATGGATCTCTCTTCCTCTGATCCCTTCACTGCCGGATCCGCCGCCCTCGCTTTGGACGAGATCGGATCTGAGGACGACCTCTTTTCCACCTACATTGATGTAGACAAGCTTGGCCCCGGCACTTCTTCTGCAGATCACACCGCTAACGCTGAACCTGAGAAGACTCCCAGACCGAGGCATAGATATAGCAACTCTGTTGATGGTTCCACCTCTACCAGTGTGTTTGGGGATGTACTGGACGCCAAGAAAGCTATGCCTCCTGATAAACTAGCTGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAGAGGATTTTGGCCAATCGACAGTCTGCTTCCCGTTCTAAAGAGAGGAAGGCACGATACATGCAGGAGCTCGAGCGCAAAGTTCAGACCCTTCAAACAGAGGCGACAACTCTTTCAGCTCAACTCGCACTGTTCCAGAGGGATACGACAGGTCTTAGTAGTGAAAATACAGAACTTAAGCTTCGGTTGCAGGCAATGGAGCAACAGGCTCATTTGCGGGATGCCTTGAATGAAGCACTAAAGAACGAAGTTGAGAGGCTCAAAGTAGCCACTGGAGAGACATCAGGCGCCTCCGATTCCTTCAACTTGGGGGGAATGCCTCATATGCCATATTTAGCATCCAGTTTCTTTCCCCTTCATCAGCAGCCAGGTTCTGCCGGCACCCACAACATGCTGCAGATGCCATTATACGGCCATTCCTCATCAAACATGTCAATACATCCTCTGCATCATCAGCTGAATTCACATCAATTCTCTGAGACCATGCAGAGTGATCCACTTGGGCGATTACAGGGTCTGGATATCAGCAGCAATGGATCTCCTCTGGTGAAATCAGAAGTCCCTTCTCTTTCTGCTAGTGAAAGTAGCGCCACATTTTGA | 1059 | 51.18 | MQDPASNPDSSISNNASTPNTHLPPPPPPPSSTRPHHRRAHSELTFRFPDDIMDLSSSDPFTAGSAALALDEIGSEDDLFSTYIDVDKLGPGTSSADHTANAEPEKTPRPRHRYSNSVDGSTSTSVFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSASRSKERKARYMQELERKVQTLQTEATTLSAQLALFQRDTTGLSSENTELKLRLQAMEQQAHLRDALNEALKNEVERLKVATGETSGASDSFNLGGMPHMPYLASSFFPLHQQPGSAGTHNMLQMPLYGHSSSNMSIHPLHHQLNSHQFSETMQSDPLGRLQGLDISSNGSPLVKSEVPSLSASESSATF | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3928092 | 3931883 | - | CmoCh01G007610.1 | Cmo01g00761 | 374244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00761 | 352 | MobiDBLite | consensus disorder prediction | 91 | 121 | - | - | |
Cmo01g00761 | 352 | Coils | Coil | 226 | 246 | - | - | |
Cmo01g00761 | 352 | PANTHER | ATBZIP TRANSCRIPTION FACTOR | 7 | 349 | - | - | |
Cmo01g00761 | 352 | Gene3D | - | 150 | 202 | - | - | |
Cmo01g00761 | 352 | CDD | bZIP_plant_RF2 | 152 | 201 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo01g00761 | 352 | MobiDBLite | consensus disorder prediction | 320 | 352 | - | - | |
Cmo01g00761 | 352 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cmo01g00761 | 352 | Coils | Coil | 167 | 194 | - | - | |
Cmo01g00761 | 352 | Pfam | bZIP transcription factor | 151 | 207 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo01g00761 | 352 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 149 | 212 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo01g00761 | 352 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cmo01g00761 | 352 | SMART | brlzneu | 147 | 211 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo01g00761 | 352 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 349 | - | - | |
Cmo01g00761 | 352 | SUPERFAMILY | Leucine zipper domain | 151 | 202 | IPR046347 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00761 | Cmo02g00697 | CCT | |
Cmo01g00761 | Cmo20g00333 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00761 | Cmo-Chr1:3928092 | Cmo20g00333 | Cmo-Chr20:1631748 | 1.45E-155 | dispersed | |
Cmo01g00761 | Cmo-Chr1:3928092 | Cmo02g00697 | Cmo-Chr2:4402783 | 8.41E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9052 | PF00170 | bZIP_1 | 1.30E-08 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00761 | - | - | vun:114193127 | 414.846 |