Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00763 ATGGCATCTAGTCGCTGCATGAATACTTCTTGCGGAGCCGCCACGCCGCATGATTGGACCAAAGGATGGCCTCTGGGATCCGCTGGATTCGCGCATCTATGTCTCAACTGCGGATCTGCTTATGAAAATCTAGTCTTCTGTGATACGTATCACTCGGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATCCATTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATATCTGGATTATGGAGGTATTGGGTGTACTACCTGTGTGAAAAGATCTCGACTTGATGTGATCCGAAGAGACGAAATTTCTAATGGATTTGATGCAGTGACAGTTGGAAATGTTGGCCTTCTGCGACCTGCTTCTGTTGAGGATCGAGTGGTCCGAAATGGCATTAAAGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCTAATGAAACCGACCATTTTCAGCAAGCCCAAAGAGTTGACAGAAGTGCATCTCCAGCGCAAAACAAAGGAGAAAATCTCAGGAGCCCATTTGGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGCCATCGGTTGGTTCGGTAGCATACTCCCAACTAGATACTAGACTAAAAGATATGCAGGAATCTCTTAGTCAGCCATCGTTAAATATAACTTTGGGGGTTCCATTAGGTACACCAAACTTTGTGGTACCCTTATCAGGAAGTGCAGCTGAAGAGGATGAAAAGAGCATTCTTCCATTTCAACAGGGCCACAGATCTCGTCCAATTTTTCCTAAGCCCTTAAAAACTGGGACCACAGTTAATTCAGAAACAAGAAAGGGAATGACTCCTCTGGTGCGTATTGCTCGACCACCTGCTGAAGGTCGGGGTAAGAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAAATATCTGGAGATTTGAATTCTACTATTGTTCCTCTATTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTTCCCCCTATCTCTCAATCAGAGGGTCTCCCTGTCAGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCAAACAACAACAGCAGAATGTATGTTTTGGAGGGCGTTACCCCTTGCATACAGTCCATGCAATTACAAGCTGGTGATACTGTTACCTTTAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAGGCAACAAATTCTTCTGATACACAGGATGCCAAGATCTCTACACTTCCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGGAGATATTAGTTTGCATAAAATCGAAAATTTTGGGGGTAGGATGACTTCAGGACAACAACCGATGTCAACCATGGACAAGAAGGGGACTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGGCCTCCACCAAGTGCAAATCCCACCATTGTCACAATCGATGACCATGAATTTGAGGAGTATGATGAACCTCCAGTTTTTGGCAAGAGAACTATATTCACTGTCCGACCAACGGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAAGTTGCCTGTGGATGTTCTTCTTCCTCCAAAGTGGACTTGTTCAGATAATATTTGGGATTTGAGCAGGTGTACATGTTCTGCACCGGAAGAGATGAACACAAAGGAACAGGAGAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACAACAACTAGGCATCCTCGACACCGACAAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACGCTCATGCTTCGCAAGAAGAAACGCCTATCAGAACGTGAAATGGAGACTTCACTCAAGGAGGGGAATTCACAATTTGATGAATCAGGAACCAGTGGGACACTGAGGGGTACATCTCTGCAAACAAACCATTCAGAGAACGAAAGAAGTCAGATCCGAGTAAAAGATGAGGAGGCTGCAAATAGCAGTGGCCAAATTGACTTGAACTGCCACCCTGACCGGGAGGACATGCAACTGGAAGTAGCAGGATTAAGCATGATGAGTCTTGTTGAGGCCGCCAGCCAACCTTTAGATAGTTACTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAACAATCCAGTCAACCAAGTAGCGCAGAGAGTGAGAGACGCCTGTCTGAGGAAGGATGCCATGGATCAGCACACGAGAGCACAAGTGATAGATGCAGAGGGCACCATTGA 2583 45.22 MASSRCMNTSCGAATPHDWTKGWPLGSAGFAHLCLNCGSAYENLVFCDTYHSEETGWRDCSFCGKRIHCGCIASKSMFEYLDYGGIGCTTCVKRSRLDVIRRDEISNGFDAVTVGNVGLLRPASVEDRVVRNGIKEEKLLQLCNIMEANETDHFQQAQRVDRSASPAQNKGENLRSPFGEVGTSFFNMTKLPVKCQPSVGSVAYSQLDTRLKDMQESLSQPSLNITLGVPLGTPNFVVPLSGSAAEEDEKSILPFQQGHRSRPIFPKPLKTGTTVNSETRKGMTPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQISGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPGGQLVMGFRKATNSSDTQDAKISTLPNGSHSGDASFSGVFQNLPLRAGDISLHKIENFGGRMTSGQQPMSTMDKKGTRNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRKLPVDVLLPPKWTCSDNIWDLSRCTCSAPEEMNTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRQGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRLSEREMETSLKEGNSQFDESGTSGTLRGTSLQTNHSENERSQIRVKDEEAANSSGQIDLNCHPDREDMQLEVAGLSMMSLVEAASQPLDSYSKQIGVSSVTSEQQSSQPSSAESERRLSEEGCHGSAHESTSDRCRGHH 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3935562 3946103 - CmoCh01G007630.1 Cmo01g00763 374246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00763 860 ProSiteProfiles Zinc finger CW-type profile. 565 615 IPR011124 GO:0008270
Cmo01g00763 860 SMART B3_2 330 430 IPR003340 GO:0003677
Cmo01g00763 860 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 829 - -
Cmo01g00763 860 MobiDBLite consensus disorder prediction 835 860 - -
Cmo01g00763 860 ProSiteProfiles B3 DNA-binding domain profile. 330 431 IPR003340 GO:0003677
Cmo01g00763 860 MobiDBLite consensus disorder prediction 721 785 - -
Cmo01g00763 860 MobiDBLite consensus disorder prediction 479 496 - -
Cmo01g00763 860 SUPERFAMILY DNA-binding pseudobarrel domain 327 431 IPR015300 -
Cmo01g00763 860 MobiDBLite consensus disorder prediction 734 759 - -
Cmo01g00763 860 Gene3D - 308 435 IPR015300 -
Cmo01g00763 860 CDD B3_DNA 328 429 IPR003340 GO:0003677
Cmo01g00763 860 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 829 - -
Cmo01g00763 860 MobiDBLite consensus disorder prediction 816 860 - -
Cmo01g00763 860 Gene3D - 562 615 - -
Cmo01g00763 860 Pfam B3 DNA binding domain 330 429 IPR003340 GO:0003677
Cmo01g00763 860 MobiDBLite consensus disorder prediction 816 834 - -
Cmo01g00763 860 MobiDBLite consensus disorder prediction 478 498 - -
Cmo01g00763 860 Pfam CW-type Zinc Finger 570 612 IPR011124 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00763 Cmo-Chr1:3935562 Cmo06g00181 Cmo-Chr6:988351 0 dispersed
Cmo01g00763 Cmo-Chr1:3935562 Cmo07g00264 Cmo-Chr7:1294037 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9053 PF02362 B3 2.00E-16 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00763 - - cmo:103497016 1497.26