Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00768 ATGTTCGAGGAGTACCTGACCAATGGTCTTACATTACGTCTTGAACAATTGGACATTGGTTCTATTGTGTGGCAAAAGGGGCCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTACATGTTGCCGATAACAATAGTACTCACATGTTCAATGACAGCGAGGTTGTAAGAATTGTTTCCAAGTTTACAAGTTGGAACATTTCAGATAGCGACATATTTGGACCGTATGAACTTCTCAGCTTGACAATATCCGATGTTTATAAGGATGTATCTATTCCATCACCATCTGATTCTACTATGAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGTGGAGCAACGCTATCTGCAATTATTTTTATTTTTATCATTACGTGTGAGGGGCCACCACATCTCAAGAAGGCATCGTCATTGTTTGACAGAAATGCATTGGTGTCAAAAACCTCCATACATATTGAGGGCGTAAAGGAGTTTGGATACCGTGAAATGGCTCTAGCTACAAACAATTTTCACGAGTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTGTACAAAGGAATTCTAGCAGATGGCACTGCTGTTGCTATCAAACGTGCACAGGAGGGCTCACTACAGGGTGAAAAGGAGTTCCTAACTGAAATACAATTATTGTCAAGATTACACCACCGAAATCTTGTGGCTTTGATTGGATATTGTGATGAAGAAGACGAACAGATGTTGGTTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTACGTTCTGCAAAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCCCTGGGTGCAGCTAAGGGAATTCTGTACCTTCACACGGAAGCTGATCCCCCAATATTCCACAGGGATATCAAGTCCAGCAACATATTATTAGACTCCAAATATTTGGCAAAGGTTGCTGATTTCGGACTTTCACGACTTGCACCTCTACCAGATACAGAAGGCGATGTGCCAAATCATGTATCGACGGTAGTAAAAGGGACACCGTCATGGATTGCTAGATCACGCAGGGAAATAATGGCCTATAAGGAAGCTAATCTTCGAAAGAAGGAAATACAAAAGTATTACAACAGGTTGGAGCTCGGATGGAGTGGTTATCTCGATCCAGAGTACTTTTTGACTCATAAATTGACAGACAAGAGTGATGTTTATAGTCTTGGTGTCGTGTTTTTAGAGATTTTAACTGGGCGGCACCCGATCTCACACGGCAAGAACATCGTTAGAGAGGTCGACCGTGCATATCAGTCTGGAAAAATTTTCTCGATTGTCGATGGTCAACTCGGATCTTATCCCCTTGAATGTGTTGAAAGATTTGTGACTTTGGCTCTGAAATGTTGCCAAAATGAAACAGATGCACGCCCTTCAATGGCAGAAGTCGTTCGAACACTCGAAACTATCTGGCTTATGCTGCCCGAGTCTGATACGAAAGTTGCAGAGCCTCCAATGACGAACGTCGTAAAAATGACCAGTCCTCCATCTTCATCATCCAACATGAATAACTATTACACATCAGAAGTCTCTGGCAGCGACCTTGTAAGTGGAGTAGCTCCCACCATCACACCCAGATAG 1614 42.69 MFEEYLTNGLTLRLEQLDIGSIVWQKGPRLRMNLKLFPLHVADNNSTHMFNDSEVVRIVSKFTSWNISDSDIFGPYELLSLTISDVYKDVSIPSPSDSTMSKGALAGIILGAIAGGATLSAIIFIFIITCEGPPHLKKASSLFDRNALVSKTSIHIEGVKEFGYREMALATNNFHESTVVGQGGYGKVYKGILADGTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEDEQMLVYEFMSNGTLRDHLSVRSAKPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYLAKVADFGLSRLAPLPDTEGDVPNHVSTVVKGTPSWIARSRREIMAYKEANLRKKEIQKYYNRLELGWSGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGRHPISHGKNIVREVDRAYQSGKIFSIVDGQLGSYPLECVERFVTLALKCCQNETDARPSMAEVVRTLETIWLMLPESDTKVAEPPMTNVVKMTSPPSSSSNMNNYYTSEVSGSDLVSGVAPTITPR 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3972850 3979235 - CmoCh01G007680.1 Cmo01g00768 374251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00768 537 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Cmo01g00768 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 347 - -
Cmo01g00768 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 372 515 - -
Cmo01g00768 537 SMART serkin_6 174 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00768 537 SUPERFAMILY Protein kinase-like (PK-like) 160 514 IPR011009 -
Cmo01g00768 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Cmo01g00768 537 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 2 347 - -
Cmo01g00768 537 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 372 515 - -
Cmo01g00768 537 CDD STKc_IRAK 180 481 - -
Cmo01g00768 537 Pfam Protein kinase domain 174 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00768 537 ProSiteProfiles Protein kinase domain profile. 174 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00768 537 Gene3D Transferase(Phosphotransferase) domain 1 250 492 - -
Cmo01g00768 537 Gene3D Phosphorylase Kinase; domain 1 144 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00768 Cmo-Chr1:3972850 Cmo03g00291 Cmo-Chr3:4131651 0 dispersed
Cmo01g00768 Cmo-Chr1:3972850 Cmo13g00001 Cmo-Chr13:22044 0 wgd
Cmo01g00768 Cmo-Chr1:3972850 Cmo14g00001 Cmo-Chr14:550 2.96E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74032 PF00069 Pkinase 1.30E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00768 - - cpep:111785908 763.451