Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00778 ATGCAGCCTCCCCACCTTCTGCTTCACCTTCTGCTCTGCCTTCTGCCCTCCCTTTGCCTCATTCCCGCCCTCAAACCAGATCTCACCTCCGACAAGGCTTCCCTTCTCGCTCTCCGTTCTTCCCTCGCCGGCCGAACCATCCAGCTCTGGAATGCAAGCCACCAAACCCCCTGTTCCTGGACTGGCGTCAAATGCCAGGGAAGCCGCGTTACTGTTCTTCGTTTGCCGGGTGCTTCCCTTTCCGGCCAAATTCCGACCGGCATTTTTAGAAATTTGACCCATCTTCGCACTTTGAGTCTCCGACTCAACGCATTGACGGGTCAGCTTCCGTCAGATCTTGCAGCATGCACTAATCTCCGCAGCCTCTACTTGCAGGGTAATGCATTTTCTGGCCCAATTCCTGAGTTTGTCTTCCAATTTCATGACCTTGTTCGTCTTAACTTGGCTTCCAATAACTTCTCCGGCGTCCTGTCTCCCCGTTTTGACAAACTCCGGCGGCTGAAGACTCTGTTTCTTGAGAACAATCGCCTTACTGGCTCATTACCGGAGCTGAAGCTGCCTAACCTCGTACAGTTCAATGTTTCCAACAATTTCTTTAATGGGTCGGTTCCTCGTCGTTTCCAATCGTTTCCCTTTACTGCTTTTATGGGTAATCCACTTTGTGGACGACCCTTTGAGAATTGCGCTCGAAATGTCATTGTTCCATTGACAGTGGATATTGATGTTAATGAGAACAAGAGAAGGAAGAAGTTGTCTGGGGCTGCGGTCGGAGGGATTGTGATGGGGTCTGTTCTGGGTTTGGTTTTGTTTTGTGTGATTTTGATGGTTTCTTGTCGGAGGCAGAGCGGTCGGAAAACAAGCACTCTGGACATGACAGCCCTTGTCGATGTAGGAGGAGAGAAGGCAATTAGTGAAGAGAATGGGGGGTATGAAAATGGGTGCTCTGTGGCGGCTACGGCGGCTACGGCGGCGCTAGAGAATAAGAAAGGGGAAGGGGATGACAACGTTGGTGGTGCTAAAAAGTTGGTGTTTTTTGGGAATGCTGGTGGGAGGGTGTTTGATTTGGAGGATCTGTTGAGGGCTTCAGCTGAAGTGTTGGGTAAGGGAACGTTTGGGACAGCTTATAAAGCTGTGTTGGAGATTGGGGCTGTTGTGGCTGTGAAGAGATTGAAGGATGTGAGTGTTTGTGAGAGGGAATTTAGGGAGAAAATTGAAGGCGTGGGAGTAATGGAACATGAGAATTTGGTTGCTCTTAAAGCTTATTATTACAGTGTTGATGAGAAGCTTTTGGTTTATGATTATATGGCTATGGGAAGCTTATCTACACTTTTGCATGGTAACAAAGGAACTGGTAGGACACCATTGAACTGGGAAATGAGGCGTGCCATTGCATGTGGAGCAGCCCGTGGCATCAAGTACTTACATTCTCAAGGCCCAAACGTTTCTCATGGAAACATAAAGTCATCCAACATCTTGCTCGCCAAATCCTACGATGCCCGAGTCTCCGATTTCGGCCTAGCGCAACTAGTTGGCCCAGCATCGAGTCCTAACAGAGTGGTGGGGTATCGTGCACCAGAGGTGACAGATTCTCGTAAAGTATCACAAAAGGCAGATGTTTACAGCTTTGGCGTATTGCTGTTGGAGCTTTTGACAGGAAAGGCCCCGAGTCACGCAGTGTTAAACGAGGAAGGGGTGGATCTACCGAGATGGGTACAGTCAGTGTTGCAAGAGGAGTGGAGGTCGGAAGTCTTCGACGCCGAACTGCTGAGGTACGAGAGCGTTGAGGAGGAGATGGTTAAAATGTTGGAGCTGGCTGTGGACTGTGCGGCGCAGCATCCTGATAGACGGCCTTCAATGTATGAAGTGAGTAGCCGCATTGAGGAGTTGTGCAGCCCTTCCGCCCATTCGAATCCCCAGCAACACAAACACAACGTTGGTGCTGCTGACAAGCCCTTTGCATGTGGTGTTGTGTTGGGCTGTAGAGTGATGGCGGTGCTGATGCTTAACGTTTATTGGAACCATTTAAGCAATGGAATTTTTCAAGTTCGGAACTCATTTGAGGGTGGAGAGAAGGAAGAGAAACACAGTGAACAGGAAAACGAAAGTCGAAAGCCACCTGGTTTGAAGATGGCGTCTGTAATTTGA 2145 49.32 MQPPHLLLHLLLCLLPSLCLIPALKPDLTSDKASLLALRSSLAGRTIQLWNASHQTPCSWTGVKCQGSRVTVLRLPGASLSGQIPTGIFRNLTHLRTLSLRLNALTGQLPSDLAACTNLRSLYLQGNAFSGPIPEFVFQFHDLVRLNLASNNFSGVLSPRFDKLRRLKTLFLENNRLTGSLPELKLPNLVQFNVSNNFFNGSVPRRFQSFPFTAFMGNPLCGRPFENCARNVIVPLTVDIDVNENKRRKKLSGAAVGGIVMGSVLGLVLFCVILMVSCRRQSGRKTSTLDMTALVDVGGEKAISEENGGYENGCSVAATAATAALENKKGEGDDNVGGAKKLVFFGNAGGRVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGAVVAVKRLKDVSVCEREFREKIEGVGVMEHENLVALKAYYYSVDEKLLVYDYMAMGSLSTLLHGNKGTGRTPLNWEMRRAIACGAARGIKYLHSQGPNVSHGNIKSSNILLAKSYDARVSDFGLAQLVGPASSPNRVVGYRAPEVTDSRKVSQKADVYSFGVLLLELLTGKAPSHAVLNEEGVDLPRWVQSVLQEEWRSEVFDAELLRYESVEEEMVKMLELAVDCAAQHPDRRPSMYEVSSRIEELCSPSAHSNPQQHKHNVGAADKPFACGVVLGCRVMAVLMLNVYWNHLSNGIFQVRNSFEGGEKEEKHSEQENESRKPPGLKMASVI 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4050900 4055652 + CmoCh01G007780.1 Cmo01g00778 374261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00778 714 Pfam Leucine rich repeat 73 128 IPR001611 GO:0005515
Cmo01g00778 714 MobiDBLite consensus disorder prediction 689 704 - -
Cmo01g00778 714 SUPERFAMILY L domain-like 50 210 - -
Cmo01g00778 714 Gene3D Ribonuclease Inhibitor 30 138 IPR032675 -
Cmo01g00778 714 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Cmo01g00778 714 Gene3D Transferase(Phosphotransferase) domain 1 435 651 - -
Cmo01g00778 714 Pfam Protein kinase domain 363 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00778 714 Gene3D Ribonuclease Inhibitor 139 246 IPR032675 -
Cmo01g00778 714 Gene3D Phosphorylase Kinase; domain 1 346 434 - -
Cmo01g00778 714 SUPERFAMILY Protein kinase-like (PK-like) 364 626 IPR011009 -
Cmo01g00778 714 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Cmo01g00778 714 PANTHER INACTIVE RECEPTOR KINASE-RELATED 23 636 - -
Cmo01g00778 714 MobiDBLite consensus disorder prediction 689 714 - -
Cmo01g00778 714 ProSiteProfiles Protein kinase domain profile. 360 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00778 714 PANTHER OS05G0588300 PROTEIN 23 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00778 Cmo-Chr1:4050900 Cmo13g01015 Cmo-Chr13:8615786 0 dispersed
Cmo01g00778 Cmo-Chr1:4050900 Cmo02g00689 Cmo-Chr2:4354239 1.57E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74033 PF00069 Pkinase 5.80E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00778 - - cmos:111452825 1238.79