Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00780 ATGGTATTCAAAGGCAGGTTTTTCTCCTCTTCCAAGAAGTCTGATTCTTCCAGTCCCGATGGATCCAGTCCTCGATTCCTTGGTTCTAACTCGCCCAGTAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATACCACTACTAGTAGCTTTAAAGGTACTGTTCTGAAAGATTCTACTAGGAGTAAGGATTGGAAACGAAAAGATGGTCAAGTTTTATTGCCGACTGAGACGCCATCGAAGTCCGAGGCAATATCTGGATTGAGCTTAGGGCCGAAGGTTAAGAAGTCGAGCGATGTGAAGGATGTGGCCTCATCGGTTTCGCCTATTCTCGCATCATCCCTTGGATTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTTTTGGGGTTTAAAGGTGATAAGGGCTCATTGGGTTCGAGCAATCTTTCCAGGAACTGTGGCAATGGAAGCTCAGGCTCCAATTCTGGTTCGACATGGTCGGCGTCTTCTAGTGGAGGGAAGAGAGAGGCGGCGAGCCAGAAGAGATTGGGGTTTCAGGACAATGTTAAAAGCTATATTCACAATGCTAGCAATCCCGACAATATGGCAACTGGTAATGCAGCATCTACTGAAAGGAGTCCAAATTTGTTAGGACAGCCTCGGTTGCAGAATGTCGAATCATCCAATGAAGCTGGACGCAATGAATCATCATGGGCATTTTCAGAAGGATCAAGAAACATAGATTTCTGTACGCCAGAGTCTTCTTATGATTGTGAAAATCCAAAAGAGTCTGAATCTCCACGCTTTCAAGCTATACTTCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCGGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGTGTACGACCTTTCCCACTCTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGGAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGATTTGGCCATTTTTGCTGCTGATCTGGTTGGAATTCTTGAAAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACCATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCCATGTCATCTCCTGGTGAATTTTGGCTTCAGTGTGAAGGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCAGGCATGCTGAAACAACTTCATACTCGAATGCTGTTCATTCTCACTAGATGTACCAGGCTACTACAGTTCCATAAAGAAAGTGGGTTAGCAGAAGATGAGAATGTTTTTCAGCTTCGTCAATCACGAAATCTGCATTCTGCCGATAAACGTATTCCTCCAGCTATGGGAAGGGAAATGAAAAATTCTAATGCAGCCAAGGCTTCTAAGGCAGCTTCATCCAGGAAATCTTACAGCCAGGAGCAGCATGGCTTGAACTGGAGCAGAGAACACGACATGCTGCCTAGGAATAATGTCTCTGCATCTTCTGATGATACTTCAAAGAAGTTGGAATCTCCTACTGGCAGAGATCGGATGGCTTCTTGGAAAAAATTGCCTTCTCCGGCAGCCAAAAGTGTGAAAGAACCTACTTTGAAGGATAAAGGTGATAATAAGAGTTTTAAATCTTTGAATGTGCCAAAAATCAGGACTGATGTTTCTGAAACTGTTTTTGCTGCTGCAAATGAGCTTCCTCTGCCAAGAGATTCTCATGACCAGCCTACCAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCATCTGTATCTGAGGAGAGTTCAATCATTTGTCGCATTTGCGAAGAAGAGATTCCTACTGCAAATGTGGAAGACCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTCTAGAGAAGATGATTGAGTCCTTTTCGCAAAAAGATTCTCAACATGTAGGAAGTCCAGATGTTGCAAAAGTTTCAAATTCTAGTATGACTGAAGAATCTGATATTTCCCCGAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTCGATTGCTTCCATGAAACTGAAAATTCTGTTTTCATGGATGACTTGAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCTGCTGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAACCAGTCCGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACACGATGATCTTACACAGATCAGTGATCTTGCAGATATTGCACGCTGTTCAGCAAATGCTCCTCTGGGTGATGATTGCTCGATGCAATATCTGTTGACGTGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGAAACTTTTGGCACTCGCATTGAGAAGTTAATACGGGAGAAGTATTTGCAGCTTTGTGAGCTGGTGGGTGATGAAAAGATTGACATAGCGAGCACTGTTATTGATGAAGATACTCCTCTAGATGATGACGTTGTTCGTAGCTTAAGAACAAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCTATCAGCCGTGGGGCATTTGGCCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTCGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGAAAAAATGCTGTTGAAAGTATTCTGGCAGAACGTGATATTTTAATATCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTCTACTCCTTTACTTGTCGTGAAAATTTATATCTCGTGATGGAGTATTTGAATGGAGGAGATCTTTACTCCTTGTTGAGAAATTTAGGCTGCTTAGATGAAGAGGTTGCTCGTGTATATATCGCAGAAGTGGTTCTTGCTTTGGAGTATTTGCATTCACTCGGGGTAGTTCATCGTGACTTAAAGCCGGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAAGTTGGTCTTATCAACAGTACTGATGATTTGTCTGGACCAGTTGTTAGCGGTATCACTCTTCATGGGTATGATGAGCCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGAAAGAAGCGTTCTGCTGTTGGCACTCCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGTGCCACAGCTGATTGGTGGTCTGTCGGGATCATTTTATTTGAGCTAATTGTTGGAATTCCACCCTTTAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCGTGGCCTCAAATACCTGAAGAGATGAGCCACGATGCTCAAGATTTAATTGATCGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATAGGCGCACATGAGGTGAAGCAGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTACTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGGCTATCCACCCAGTGAACTTGAGGATTCAAGTGATGCTGATAGCTTAAGTGGTAACAGTAGTGTGAGCAATCGTCAAGATGAAGTGGTTGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTGAAGGATGATCCTCCCGATCACGATGCATAA 3891 42.71 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPSRSDKKKNKSAAKDEPQISNTTTSSFKGTVLKDSTRSKDWKRKDGQVLLPTETPSKSEAISGLSLGPKVKKSSDVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGNGSSGSNSGSTWSASSSGGKREAASQKRLGFQDNVKSYIHNASNPDNMATGNAASTERSPNLLGQPRLQNVESSNEAGRNESSWAFSEGSRNIDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRGKFDKAKEEVNSDLAIFAADLVGILEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCEGIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIPPAMGREMKNSNAAKASKAASSRKSYSQEQHGLNWSREHDMLPRNNVSASSDDTSKKLESPTGRDRMASWKKLPSPAAKSVKEPTLKDKGDNKSFKSLNVPKIRTDVSETVFAAANELPLPRDSHDQPTKHQHKPSWGWGDQPSVSEESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFSQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETENSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSPFDLFLAGKGAYYEHDDLTQISDLADIARCSANAPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVETFGTRIEKLIREKYLQLCELVGDEKIDIASTVIDEDTPLDDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPVVSGITLHGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGAHEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHGYPPSELEDSSDADSLSGNSSVSNRQDEVVDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPDHDA 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4055429 4073844 - CmoCh01G007800.1 Cmo01g00780 374263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00780 1296 Gene3D Transferase(Phosphotransferase) domain 1 970 1193 - -
Cmo01g00780 1296 ProSiteProfiles AGC-kinase C-terminal domain profile. 1176 1279 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo01g00780 1296 ProSiteProfiles Protein kinase domain profile. 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00780 1296 SUPERFAMILY Protein kinase-like (PK-like) 883 1219 IPR011009 -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 9 31 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 495 510 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 64 78 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 1214 1243 - -
Cmo01g00780 1296 Gene3D Phosphorylase Kinase; domain 1 884 1204 - -
Cmo01g00780 1296 Coils Coil 640 660 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 189 244 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 573 597 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 726 748 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 1 113 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 1225 1242 - -
Cmo01g00780 1296 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 25 1293 - -
Cmo01g00780 1296 SMART serkin_6 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 46 63 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 447 551 - -
Cmo01g00780 1296 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 1293 - -
Cmo01g00780 1296 CDD STKc_MAST_like 892 1180 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 148 181 - -
Cmo01g00780 1296 Coils Coil 315 335 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 659 682 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 468 486 - -
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 127 244 - -
Cmo01g00780 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Cmo01g00780 1296 MobiDBLite consensus disorder prediction 657 692 - -
Cmo01g00780 1296 Pfam Protein kinase domain 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00780 Cmo-Chr1:4055429 Cmo15g01451 Cmo-Chr15:9842541 0 dispersed
Cmo01g00780 Cmo-Chr1:4055429 Cmo02g01030 Cmo-Chr2:6257676 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74034 PF00069 Pkinase 1.40E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00780 - - csv:101214945 2253.79