Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00783 ATGATAGCCAGCGCCACCACTTCATCCGACCCTTTTTCTTCCTTGGAAAATGGCACCAAGAGAAAGCGAAGGCCTGCAGGGACACCAGAGGGGCTTGAATTATTGTGGCTAGATCCGGACGCAGAGGTTGTGTCTCTGTCGCCCAAGACGTTGCTCGAATCGGACCGATATGTGTGCGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACCTCCAGATGCATAGGCGGCGCCATAAGGTGCCATGGAAGCTGTTGAAGAGGGAGAGTCCTGTTGTGAGGAAGAGGGTTTTTGTTTGTCCTGAGCCTACCTGCCTGCACCATGACCCTTGTCATGCGCTTGGTGACCTTGTTGGTATCAAGAAGCACTTCCGACGGAAGCATAGCAACCATAAGCAATGGGTTTGTCAAAAATGCTCCAAGGGCTATGCTGTTCAGTCTGATTATAAAGCCCATCTCAAAACTTGTGGCACTCGTGGCCACTCGTGTGATTGCGGCCGTGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGACATCTCCAGCAGCAATCCCAAACCCTCCAGCCGGCCGCATGTTTGTCCCAAACGGCATCGAGTCCAAGCCCATCCAGCGACACCAACATCAGCAGCGCACCCAATTGGGCAGCTCTCATAGCGCCACCCATTTCAAAGCCTCCGGACGCCAACAATAATGGCTCACCACACGATCACAATCTAGACCTCAAACTCTCAACTGGGTCGAATTCGAATTCGAATTCGAATCCGAATCCGAATCCGAATCTTGTAGAGGGAAACAAAGGGTGTTCTTCAATCAAACTCCAGCTCTCGATTGGATCGTGCGAGTTTGTGGACGGTGCGAGAGATGTTAGAGACGAAGTCGGGCAGACACTAAGAGTTGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCTAGACAGCAAGCCAAGCGGCAAGTAGAAATAGCGGAGCAAGAATTCGCAAATGCCAAGAGAATGAGACAACAAGCACAAGCGGAGCTCGATAAAGCTATAGCGCTTAAACAAACCGCAATCAAACGGGTCAATTCAACTATTCTTGAAATCACTTGTCAAGCTTGCCAAAAGCAATTTCAAGCGAAAACAACAACTACTACAACAACAACAGCTGCATCGACTACTACTACAACAACGGCATCGTGCCGATCGTGA 1206 50.5 MIASATTSSDPFSSLENGTKRKRRPAGTPEGLELLWLDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLQQQSQTLQPAACLSQTASSPSPSSDTNISSAPNWAALIAPPISKPPDANNNGSPHDHNLDLKLSTGSNSNSNSNPNPNPNLVEGNKGCSSIKLQLSIGSCEFVDGARDVRDEVGQTLRVAMAEKAYAEEARQQAKRQVEIAEQEFANAKRMRQQAQAELDKAIALKQTAIKRVNSTILEITCQACQKQFQAKTTTTTTTTAASTTTTTTASCRS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4105944 4108431 - CmoCh01G007830.1 Cmo01g00783 374266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00783 401 SMART c2h2final6 98 128 IPR013087 -
Cmo01g00783 401 SMART c2h2final6 57 79 IPR013087 -
Cmo01g00783 401 SMART c2h2final6 134 161 IPR013087 -
Cmo01g00783 401 MobiDBLite consensus disorder prediction 198 217 - -
Cmo01g00783 401 MobiDBLite consensus disorder prediction 1 15 - -
Cmo01g00783 401 Coils Coil 304 359 - -
Cmo01g00783 401 Gene3D Classic Zinc Finger 119 198 - -
Cmo01g00783 401 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmo01g00783 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmo01g00783 401 PANTHER OS03G0310200 PROTEIN 1 397 IPR039288 GO:0009630
Cmo01g00783 401 MobiDBLite consensus disorder prediction 382 401 - -
Cmo01g00783 401 MobiDBLite consensus disorder prediction 225 272 - -
Cmo01g00783 401 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 397 - -
Cmo01g00783 401 MobiDBLite consensus disorder prediction 1 27 - -
Cmo01g00783 401 MobiDBLite consensus disorder prediction 233 272 - -
Cmo01g00783 401 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Cmo01g00783 401 Gene3D Classic Zinc Finger 56 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00783 Cmo-Chr1:4105944 Cmo13g01208 Cmo-Chr13:9482716 0 dispersed
Cmo04g02247 Cmo-Chr4:16802386 Cmo01g00783 Cmo-Chr1:4105944 6.87E-35 dispersed
Cmo01g00783 Cmo-Chr1:4105944 Cmo18g00067 Cmo-Chr18:451754 3.73E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9055 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00783 K25871 - csv:101209426 558.14