Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00788 ATGGTTTTGACAACAGTAGCAGACTCCGGCGATTCTGTGAACTGCACTTTTGGTTCCAGATATGTCCGCTCTCCGCCGCCGAAGTTCAATCTGGGGGAAAAATCGATACCCAAAGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTTGATGGGATACCCAGGTTGAACTTGGCCTCCTTTGTTACCACATGGATGGAGCCTGAATGTGATAACCTGATCATGGCTTCTCTCAACAAGAACTATGTGGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGGCTGCAGTAGGTGTAGGGACTGTGGGATCATCAGAGGCTATTATGCTGGCGGGTCTTGCTTTCAAGAGGCAATGGCAGAACAAAAGAAGATCTCAAGGCAAGCCCTGTAATAACCCCAACATAGTCACTGGAGCTAATGTGCAGGTGTGTTGGGAGAAGTTTGCTAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTTATGGATCCTGTGAAGGCTGTTGAACTTGTGGATGAGAACACCATTTGTGTTGCAGCCATTTTGGGATCCACTTTGACAGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTGCTCTCTAAGAAGAATAAGGAAACGGGTTGGGATACCCCAATTCATGTCGATGCAGCCAGCGGCGGGTTCATAGCTCCGTTCCTTTATCCCGATCTCGAGTGGGATTTTCGGTTGCCTTTAGTGAAGAGTATCAATGTCAGTGGCCATAAGTATGGGCTTGTTTATCCTGGTGTTGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTTCCTGATGAGCTTGTGTTCCATATTAACTATCTTGGTTCTGATCAACCCACTTTCACTCTTAACTTCTCTAAAGGTTCTAGCCAAATCATTGCTCAGTATTATCAGTTCATACGGCTAGGTTTCGAGGGATACAAAAACGTGATGGAGAACTGCAAGGAGAATGCAAGAGTGTTGAAAGAAGGAATAGAGAAGATGGGAAGGTTTGAGGTAGTTTCCAAGGATGTTGGAGTACCCCTAGTAGCCTTCACTCTCAAAGACAGCACCAAGCACACCGTGTTCGAGATATCCGAGAACCTAAGGAGGTTTGGATGGATCGTGCCAGCTTACACGATGCCACCGGATGCTCAGCACATCGCCGTGCTACGTGTCGTGATCAGGGAGGACTTCAGCCGGAGTTTGGCAGAGAGATTGATCTTGGACATCGATAAAGTCCTGAAGGAAGTCGACGCGCTGCCGGTTCGGGTGGCTGTGAAAGCAGCAGCAGAAGAAGATGGTGAGAGTATTATAAAGCATGTGAAGAAGAGTGATAAGGAGATTGAAGGAGAAATAGCTGCATATTGGAAGAGGCTTGTGGATGGCAAGAGAACTGGGAGTAAGAATGCAGATTGCCGCCAATCAATCCAACATTCTCAACTCCATCATCTTCTATTCATTTCAATTCCGCAGATTCCTGCACTGAAGATGGACGAATCCACTCTGAGGCGAAAGGTTCAGAGGAAATCAAAAATCAGAGGTTACAGCATCAAACTAGATGCTCTTGCAGAAATTGTTTCCTTTGCCTCTCGTTTCGATGGCTGCGAAGACGACGCCATAGATTTGGTTCTCGACCATCTTCATGACGAATCCTTGCAATCTTCGATAATAGACAAGGATGCGGTGCATCGGGTTGTCAGTATTCTACTTGCAGCTGATGAAGCGGGGGAAGAATGTCCCGATACCAGTACTAGTACATCGGCTCTTTGCATCATAGACGCTTTTGATATCTCCAAGTATCGTTATGATCCCATCAAGAAGATCTTCTACATGCACACAGGAAGCCTTCCAATTCATGGTGATGCTTCTGCTAAAGCTGCTTTGTATCGAGATAGGTTTCTCCTACTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCAAAACCCGCTTTTGACAGTGGCATGTCTCATTTTGGAAGCTGTGAGATTTCTCCTATTCAGTCTCTGGTGGGGCAAACTGGGAGGAAATGGGTCATGGGAGTGATCTCTCAGATGGAGGATGGTCACTTTTTCTTGGAGGACCTTACTGCATCTGTGGAAATTAATTTATCTAGTGCTATATCCTTTACAGACATCCTCTATAATTTGGAAAAATCTAAACTTCACAAGATAACTACAGGCCTGTTTACAGAGAACACCATCGTTGTAGCAGAAGGAGAGATGCTCGTGGAGGGTATTTTCAAGGTTATTACATGTGGATTTCCTCCATTAGAGGACAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTTCTCTGACTAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAAAAGAGAGCCGTTAACGATATGTTTGTCATACTCTCTGACATTTGGTTGGATAGTGAAGAGGTGAAGAATAACCTCTTTATATTTTACGTGCATTGTGTGTCTGTGAAGCTTGGTGCCTTAACAGAATTTGTTCATTTGGCCATGGGAAAACTGGAGACAATTCTTGATGGGTTTGAGAATGTGGAAATTGTTCCTTCCTTGTTTGTTTTGATGGGGAATTTTTGTTCCCGTCCATGTAATCTTGCCTTCAATTCTTACTCAAGTCTCAGATTACAATTTGGTAAGCTAGGAAAAATGATAGCAGCTCGTCCACGGTTAAAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACAGTTTTACCCAGGTGTGCTTTGCCCAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATCTTCTCAAGTAACCCTTGCAGGGTTAGGTTCTACACCCAAGAAATTGTATTTTTCCGACAGGACCTACTTTACAGAATGCGTCGTTCCTGTCTCATACCGCCATCTACAGAAGAAACAAGTGATCCTTTTGAACATCTTGTTGCTACCATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTATGACCACTGTCTTCATCTTTATCCTACTCCTCATGTGATAGTTCTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTCAATCCCGGTTCCTTCACCAATGACAGCACCTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAATTATCTGCCTTAATGATTGGAAACTTGACTTGTTTAGCTGAATATCGTATTGGAAAATGA 3267 44.48 MVLTTVADSGDSVNCTFGSRYVRSPPPKFNLGEKSIPKDAAYQIIHDELMLDGIPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQAAVGVGTVGSSEAIMLAGLAFKRQWQNKRRSQGKPCNNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLKEGIEKMGRFEVVSKDVGVPLVAFTLKDSTKHTVFEISENLRRFGWIVPAYTMPPDAQHIAVLRVVIREDFSRSLAERLILDIDKVLKEVDALPVRVAVKAAAEEDGESIIKHVKKSDKEIEGEIAAYWKRLVDGKRTGSKNADCRQSIQHSQLHHLLFISIPQIPALKMDESTLRRKVQRKSKIRGYSIKLDALAEIVSFASRFDGCEDDAIDLVLDHLHDESLQSSIIDKDAVHRVVSILLAADEAGEECPDTSTSTSALCIIDAFDISKYRYDPIKKIFYMHTGSLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPAFDSGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFFLEDLTASVEINLSSAISFTDILYNLEKSKLHKITTGLFTENTIVVAEGEMLVEGIFKVITCGFPPLEDRDKSLKLLAGQDFFGGGSLTKEETLRLADLEKRAVNDMFVILSDIWLDSEEVKNNLFIFYVHCVSVKLGALTEFVHLAMGKLETILDGFENVEIVPSLFVLMGNFCSRPCNLAFNSYSSLRLQFGKLGKMIAARPRLKEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSALMIGNLTCLAEYRIGK 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4138177 4149168 - CmoCh01G007880.1 Cmo01g00788 374271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00788 1088 Gene3D - 504 575 - -
Cmo01g00788 1088 Gene3D - 65 340 IPR015421 GO:0003824
Cmo01g00788 1088 Gene3D - 829 1069 - -
Cmo01g00788 1088 SUPERFAMILY PLP-dependent transferases 15 424 IPR015424 -
Cmo01g00788 1088 Gene3D - 1 64 - -
Cmo01g00788 1088 Gene3D - 341 428 - -
Cmo01g00788 1088 PANTHER GLUTAMATE DECARBOXYLASE 1 474 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo01g00788 1088 Pfam DNA polymerase alpha/epsilon subunit B 844 1037 IPR007185 GO:0003677|GO:0006260
Cmo01g00788 1088 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 424 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cmo01g00788 1088 PANTHER GLUTAMATE DECARBOXYLASE 1 474 - -
Cmo01g00788 1088 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00788 Cmo-Chr1:4138177 Cmo15g00790 Cmo-Chr15:3875072 0 dispersed
Cmo01g00788 Cmo-Chr1:4138177 Cmo04g02380 Cmo-Chr4:17741623 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00788 K02325 - csv:101207444 934.865