Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00790 ATGGAGTTCGGCACTGGCGGCGGCGGTGGTTGGGACAATGATTCCTCCTCCGACCCACGACGGAGTAGAAAACGCTACCATCGTCACACCGCCAACCAGATTCAGCGGCTCGAAGCAATGTTCAAAGAGTGCCCTCATCCGGATGAGAAGCAGAGATTACAGCTGAGCAGAGAGCTGGGTTTAGCTCCCCGACAGATCAAATTTTGGTTCCAAAACAGGAGGACCCAGATGAAGGCACAACATGAAAGGGCAGATAATAGCGCACTTCGAGCAGAGAACGACAAGATTCGTTGCGAGAACATAGCCATCAGAGAGGCACTCAAGAATGTCATCTGCCCCTCCTGCGGCGGCCCTCCCCTTCACGACGCTTACTTCGATGAACACAAATTAAGAATGGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTGTCTAGCATGGCGGCTAAGTACATTGGGCGGCCAATCTCTCAGCCATCTCATTTTTCTTCATTAGAGCTATCCATGAGTAGTTTTAGTTCCCATGAAATGGGATGTTCTTCTCTTGATCTTGATTTGCTTCCTGCAAGTTCTTCAAATGTTCTTCCAATTCATCTCTCCAATATGGATAAGACCCTGATGAGTGAAGTTGCTACAAATGCCATGGGAGAGTTGCTAAGGCTTTGTCAAACTAATGAACCATTGTGGATGAAATCACGAAGCGATGGACGGGATGTTCTTGATCTCGAAACGTATGAACAGGCTTTTCCAAGAGCCAATGCGCCGTTGGAGAATCTCCATTTTCGTACCGAAGTGTCTAGAGATTCCGGGGTGGTGATCGTGAATAGTGCAACGTTGGTTGATATGTTTATGGACTCGAACAAATGGAGTGAGTTATTTCCGACGATTGTTTCGAGTGCAAGAACGATTGAAGTTATATCGTCCGGGATGTTGGGAAGTCATCATAATGGCTCGTTGCAACTGATGTACCTAGAATTGCAGCTACTTTCCCCATTGGTTCCGACTCGCCATTTTTACGTTCTTAGATATTGTCAACAAATCGAGCAGGGAATGTGGGCTGTAGTCGATGTTTCGTATAACGTCACCGGAGGAAGCCAAATGGTTTCTCATTCTCAATGTCGTCGCTCTCCCTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGCGGATTAGCCTTCAGTGCCGAACGGTGGCTCGCAACGCTTCAACGAACGTCCGAAAGATTTGCGTGTTCAATGGTTACTAGTAGTTCGAGTCAGGATCTCGGCGGAGTCATTCCATCATTAGAGGGAAGGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAACAATTTCTGCGCTAGTATCACTACGTCTCATGGTCACCGTTGGACGACTCTATCTGGGACGGATGAGGTCGGTGTTTGTGTCTCGGTTCATAAAAGTATGGATCCTGGTCAGCGTAACGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCTGTTCCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGTGGGATGTCCTGTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATCACCAACGGATCCCATCCAGGAAACTGCATATCTGTTCTTAGAGCTCTGAATTCGACACAGAACAACATGTTGATACTCCAAGAGAGTTGCATAGACTCATCTGGATCACTTGTTGTGTACTGTCCTGTGGATCTACCAGCCATGAATCTTGCAATGAGTGGGGAAGATCCATCAAGCATTCCTTTACTACCATCAGGATTCGCGATTCTCCCGGACGGTCGACAGGATCAAGGAGAGGGCGCATCGAGCAGCTCGGACGTGCAGAGGTCAGGTGGGTCGTTGGTGACGGTAGCGTTTCAGATACTCGTAAGTAGCTTGCCATCCGGGAAGCTGAATTTGGAATCAGTGACAACGGTTAATAACCTCATTAGTACCACTGTCCACCAAATCAAAACAGCCTTAAATTGTCATAGCTCCTCCTGA 2094 47.37 MEFGTGGGGGWDNDSSSDPRRSRKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLHDAYFDEHKLRMENAHLKEELDRVSSMAAKYIGRPISQPSHFSSLELSMSSFSSHEMGCSSLDLDLLPASSSNVLPIHLSNMDKTLMSEVATNAMGELLRLCQTNEPLWMKSRSDGRDVLDLETYEQAFPRANAPLENLHFRTEVSRDSGVVIVNSATLVDMFMDSNKWSELFPTIVSSARTIEVISSGMLGSHHNGSLQLMYLELQLLSPLVPTRHFYVLRYCQQIEQGMWAVVDVSYNVTGGSQMVSHSQCRRSPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFSAERWLATLQRTSERFACSMVTSSSSQDLGGVIPSLEGRRSMMKLAQRMVNNFCASITTSHGHRWTTLSGTDEVGVCVSVHKSMDPGQRNGVVLSAATTIWLPVPPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNCISVLRALNSTQNNMLILQESCIDSSGSLVVYCPVDLPAMNLAMSGEDPSSIPLLPSGFAILPDGRQDQGEGASSSSDVQRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSSS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4159023 4161970 - CmoCh01G007900.1 Cmo01g00790 374273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00790 697 SUPERFAMILY Bet v1-like 457 688 - -
Cmo01g00790 697 SUPERFAMILY Homeodomain-like 10 80 IPR009057 -
Cmo01g00790 697 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Cmo01g00790 697 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 694 - -
Cmo01g00790 697 SUPERFAMILY Bet v1-like 202 436 - -
Cmo01g00790 697 CDD homeodomain 23 81 IPR001356 GO:0003677
Cmo01g00790 697 SMART START_1 209 435 IPR002913 GO:0008289
Cmo01g00790 697 Gene3D - 11 96 - -
Cmo01g00790 697 ProSiteProfiles START domain profile. 200 438 IPR002913 GO:0008289
Cmo01g00790 697 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 694 IPR042160 -
Cmo01g00790 697 SMART HOX_1 21 84 IPR001356 GO:0003677
Cmo01g00790 697 Pfam START domain 210 434 IPR002913 GO:0008289
Cmo01g00790 697 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Cmo01g00790 697 Gene3D - 209 435 IPR023393 -
Cmo01g00790 697 CDD START_ArGLABRA2_like 204 434 - -
Cmo01g00790 697 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Cmo01g00790 697 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00790 Cmo-Chr1:4159023 Cmo14g00882 Cmo-Chr14:4675827 0 dispersed
Cmo01g00790 Cmo-Chr1:4159023 Cmo13g01146 Cmo-Chr13:9265340 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9057 PF01852 START 3.30E-45 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00790 K09338 - csv:101215660 1171.76