Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00803 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGATCAGAGTCTCAGGACGTTGGTGGCCGTGGCTCCCAAGGATTTGCTGAAAGGAGAGACTTCCCACAGCAACATAGTGGCAGTGCATACCAGGGTGGGGGGAGAGGCTGGGCTTCTCAAGGGGGACGTGGAGGTCAAGGTGGTGGTCGTGGCCGAGGGACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGAAGGGGTAGAGGTGGGCAATATCAGCATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCATCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATTGTTAGAACAACAATTTCAGCAGATTTCCATTCAGCAGGAATCTGATCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCTGGAAAGGGTAGCACTGGCACAAGGTGTATTGTCAAGGCTAACCACTTCTTTGCGGAGCTTCCAGATAAAGATCTTCATCAGTATGATGTTACTATTACGCCAGAAGTCACTTCGCGTGTCTATAGTCGAGCTGTAATGGAGCAGCTGGTGAAGTTATACAAGGTCTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACTGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATAACTCTTTTTGACGAGGAAGATGGATCAGGAGGACAAAGGCGGGAGAAAGAATTTAAAGTCGTAATCAAATTTGCTGCTCGTGCTGATCTACACCATTTAGGACTCTTTCTTCAAGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTCTGGATATTGTTTTACGCGAATTGCCTACTTCAAGGTATTCCCCTGTGGGCCGATCATTTTACTCTCCAAACCTTGGTAGACGTCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATCGACTTTGTGACTCAGCTTCTCAACCGCGATATGTCATCCAGACCATTATCTGATGCGGACCGTGTTAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGATTGACATCACAAGCAACGCGGGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTATGAAACGTATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGACAGAGGTATTCCAAACGGCTCAACGAGAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCACACGATAGAGAGGCAGACATTATGCAGACAGTACGTCATAATGCATATCATAACGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTCCACCATGGCTAAAATATCATGACACAGGCAGAGAAAAAAATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGTGTAAATTTCTCTCGCTCTGTGCAAGAGAGTGTCACTAGCAGGTTTTGTTATGAACTGGCTCAAATGTGTTACATCTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCCCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCGACCCCAGGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTCTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTTAAAATGAGTAAACAATATTTGGCCAACGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCATTATCTAGGAACATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGACGTAACCCATCCGCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTGAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACCGGGATGGTGTTAGTGAAGGACAATTCTACCAAGTTTTGTTACATGAGCTGGATGCCATTAGAAAGGCTTGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTCGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAATATATTACCTGGTACGGTTGTCGACTCCAAAATTTGTCATCCTACGGAATTTGACTTCTACCTTTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAAAATAAGTTCACAGCTGACGGATTGCAGACTCTAACAAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGCTTTTATATGGAACCTGAAACCTCTGATATTGGATCAATCAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTAGTGGCGCTCGCAGTACACGGTCTCCAAGGTTATGTTCTATTGTTGAAGTGCGACTATATATGAGGTGGCCTCCTGGCCTGTTTTTATTTACTACCACTACTACTCTACTACTACCACGGGTTTCACTCGAAGTGGTCTTGAAGTCTTGCAGTACTCGTGTGATTAAACTCTAG 3252 46.31 MGRKKRTEGGGERSESQDVGGRGSQGFAERRDFPQQHSGSAYQGGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGQYQHGGRSNYGGGNRGGMGSGGIGGGPSSGGPSRPSVPELHQATPVYQGGVTQPISSVASSSSHPPDTSLLEQQFQQISIQQESDQSQAIQPAPPSSKSMRFPLRPGKGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYSRAVMEQLVKLYKVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYSPVGRSFYSPNLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDMSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDREADIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKNCLPQVGQWNMMNKKMFNGGTVNNWMCVNFSRSVQESVTSRFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILRPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRNIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDIGSISSDAAAGRGGVSGARSTRSPRLCSIVEVRLYMRWPPGLFLFTTTTTLLLPRVSLEVVLKSCSTRVIKL 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4221278 4227605 - CmoCh01G008030.1 Cmo01g00803 374286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00803 1083 SMART DUF1785_2 342 394 IPR014811 -
Cmo01g00803 1083 Pfam Glycine-rich region of argonaut 73 180 IPR024357 -
Cmo01g00803 1083 Gene3D paz domain 388 513 - -
Cmo01g00803 1083 SMART Piwi_a_2 685 1006 IPR003165 GO:0003676
Cmo01g00803 1083 SUPERFAMILY PAZ domain 202 540 IPR036085 GO:0005515
Cmo01g00803 1083 MobiDBLite consensus disorder prediction 163 180 - -
Cmo01g00803 1083 Pfam Argonaute linker 2 domain 535 581 IPR032472 -
Cmo01g00803 1083 MobiDBLite consensus disorder prediction 163 195 - -
Cmo01g00803 1083 Pfam Piwi domain 686 1005 IPR003165 GO:0003676
Cmo01g00803 1083 ProSiteProfiles PAZ domain profile. 395 509 IPR003100 GO:0005515
Cmo01g00803 1083 MobiDBLite consensus disorder prediction 1 125 - -
Cmo01g00803 1083 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 1025 - -
Cmo01g00803 1083 MobiDBLite consensus disorder prediction 1 15 - -
Cmo01g00803 1083 Pfam Mid domain of argonaute 592 666 IPR032473 -
Cmo01g00803 1083 ProSiteProfiles Piwi domain profile. 685 1006 IPR003165 GO:0003676
Cmo01g00803 1083 Pfam Argonaute linker 1 domain 343 393 IPR014811 -
Cmo01g00803 1083 CDD PAZ_argonaute_like 394 508 - -
Cmo01g00803 1083 Pfam PAZ domain 400 524 IPR003100 GO:0005515
Cmo01g00803 1083 Gene3D - 573 748 - -
Cmo01g00803 1083 CDD Piwi_ago-like 553 1005 IPR045246 -
Cmo01g00803 1083 Gene3D - 755 1046 IPR036397 GO:0003676
Cmo01g00803 1083 PANTHER PROTEIN ARGONAUTE 1A 87 1025 - -
Cmo01g00803 1083 SUPERFAMILY Ribonuclease H-like 680 1006 IPR012337 -
Cmo01g00803 1083 SMART PAZ_2_a_3 399 531 IPR003100 GO:0005515
Cmo01g00803 1083 Pfam N-terminal domain of argonaute 199 333 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00803 Cmo-Chr1:4221278 Cmo14g01794 Cmo-Chr14:13773102 0 dispersed
Cmo13g00276 Cmo-Chr13:2260082 Cmo01g00803 Cmo-Chr1:4221278 7.72E-88 dispersed
Cmo01g00803 Cmo-Chr1:4221278 Cmo13g01159 Cmo-Chr13:9330678 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00803 K11593 - csv:101212130 1815.82