Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00805 ATGGCCACTCAGCTCATTATCCTGTCGCTCATTTCCGTGGCACTCCTCGCTGCCGTTTCCCACACCGAAGCCCGCGCCATGAACATGAACGCTATCGACCGATGCTGGCGACCGAACCCATACTGGAGAAAAAACAGGCAAAAGCTCGCCCTTTGTTCAATTGGGTTCGTCGGAAAAATGACCAACAACATCGGAAGAAACCTCGTACACTACCAAGTCACGGACCCCAGCGACGACCCACTAACCCCACGCCCAGGCACCCTCAGATACGGCGCCACAATGATCAAACCCAAAGTGTGGATCACGTTTCAAAAAGACATGCACATTGTGCTCAACAAGCCGCTTATTATTAGCAGCTACACGGCCATCGACGGCCGTGGCGCCACCGTGCACATCACGGGGAATGCGTGTCTGATGGTGTCTAGAGCCACCAATGTCATAATCCATGGGCTTATTATCCACCATTGCAAGGCCCAGGCGGCTGGCCGTGTAATGGGGCCGGGTTCGAAGATCGTTTCGTTGGGACACGTGGACGGTGATGCCATTCGTTTGGTTAGTGCTTCTAAGATTTGGATTGACCATAACACGCTGTATCGGTGTGAGGATGGGCTGATTGATGTCACTAGAGGCTCTACTGATATCACCATTTCTAACAATTGGTTGAGAGATCAAGATAAGGTTATACTTTTGGGTCACGACGATGATTATTTTCGGGACCGAAACATGAAGATCATATGGAGCACAGGCAAAGTAGAGAACGCCAAGTGGAAGTTCCATTCAGTAAGAGACGTTTTTGAAAACGGCGCTTCCTTCGCACAGATCGGCGCTGGCCGAGGCGGTGTCAAGCCAAATTACAATGCCCTGCAGCGCTTCCCAGTGGTAGACGCCAAGTGGTTGCGGTCATTGACAAGCTCTTCCGGCGCCCTGCGCTGCTCACCACGCTCAAGGTGTTGA 954 52.2 MATQLIILSLISVALLAAVSHTEARAMNMNAIDRCWRPNPYWRKNRQKLALCSIGFVGKMTNNIGRNLVHYQVTDPSDDPLTPRPGTLRYGATMIKPKVWITFQKDMHIVLNKPLIISSYTAIDGRGATVHITGNACLMVSRATNVIIHGLIIHHCKAQAAGRVMGPGSKIVSLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLIDVTRGSTDITISNNWLRDQDKVILLGHDDDYFRDRNMKIIWSTGKVENAKWKFHSVRDVFENGASFAQIGAGRGGVKPNYNALQRFPVVDAKWLRSLTSSSGALRCSPRSRC 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4233678 4235670 + CmoCh01G008050.1 Cmo01g00805 374288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00805 317 PANTHER PECTATE LYASE 18-RELATED 11 244 IPR045032 GO:0030570
Cmo01g00805 317 SMART amb_all 106 286 IPR002022 -
Cmo01g00805 317 PANTHER PECTATE LYASE 244 314 - -
Cmo01g00805 317 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Cmo01g00805 317 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Cmo01g00805 317 PRINTS Pollen allergen Amb family signature 77 102 IPR018082 -
Cmo01g00805 317 SUPERFAMILY Pectin lyase-like 29 247 IPR011050 -
Cmo01g00805 317 Pfam Pectate lyase 117 235 IPR002022 -
Cmo01g00805 317 PANTHER PECTATE LYASE 11 244 - -
Cmo01g00805 317 PANTHER PECTATE LYASE 18-RELATED 244 314 IPR045032 GO:0030570
Cmo01g00805 317 Gene3D - 29 248 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00805 Cmo-Chr1:4233678 Cmo13g00799 Cmo-Chr13:7568287 4.89E-63 dispersed
Cmo01g00805 Cmo-Chr1:4233678 Cmo13g01161 Cmo-Chr13:9340364 1.41E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00805 K01728 - csv:101217103 405.986