Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00833 ATGGGAAGGGTTAAGCTCAAAATAAAGAAATTGGAGAGCACCGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGGCATGGGATTTTGAAGAAAGCTCGGGAACTTGCTATACTCTGCGATATTGACATTGTTCTTCTCATGTTTTCGCCAACTGGAAGGCCCACGCTATATCAAGGTGAACGCAGCAACATTGAGGAGGTCATTACAAAGTTTTCTCAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTCGAAAGCCTTGAAGCGCTGAAGAAAACGTTTAAGAAGTTAGACCACGACGTAAACATAAAAGATTTTGTGGGTTCGAGCTCTCAAGATTCTGAGCAGGAATTGACCAATGAAGTTAGCATATTGCGAGATCAGATTGCTGATTCACATAAGAGACTGAGCTATTGGAGGAATCTTGATAATATCAACAATATAGAACATCTCCAGAAGATGGAAGATCTAGCAAGGGAATCCCTAAATCAAATGCGTCTACACAAGGAAAACGTAAGAAGACACCAAATACTCTCACAAGACTTCACTTGCCAGTATCCGGGTGGTGGGATGTCCTTACCTTTGATGATGGACGACATGCAAGGCACTCAACCCCTCTTATGGTTTCCCAACTATTGCAGTCAACAGATTGCTTTACCAACTGAGACTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCCATGGCTACATCGTTTTCGAGCTTTCCTAGTTTCTTCAACCCTGGGAAGCAACTTGAAGCAGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGGTTTAAATGAACTAAGTGGAACCTCTTGCTCAACTCTGCAACTTTGTGACCAATATCCATACCCTACGTGTGATGGTTCCAACTTCCAAGATGACAAGAAACTGAATCTTGAGATGGAGATGAACTTACATGCAAATTGCATAAATAATCAACTAAATGGCAAGTTGGAGCTCTCTAGAGCTCTATATGGTGATGACCAGCATCCTTGGGCTTCTATACCAGGGCCTTGTAGCATTCCAATGTATCAAAGCAATGCGTACCACCATCAACCAAATTGA 1083 42.84 MGRVKLKIKKLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGRPTLYQGERSNIEEVITKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDSEQELTNEVSILRDQIADSHKRLSYWRNLDNINNIEHLQKMEDLARESLNQMRLHKENVRRHQILSQDFTCQYPGGGMSLPLMMDDMQGTQPLLWFPNYCSQQIALPTETSFLQPGDVECSMATSFSSFPSFFNPGKQLEAGISGQVDSMPQGDGGLNELSGTSCSTLQLCDQYPYPTCDGSNFQDDKKLNLEMEMNLHANCINNQLNGKLELSRALYGDDQHPWASIPGPCSIPMYQSNAYHHQPN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4449565 4452986 + CmoCh01G008330.1 Cmo01g00833 374316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00833 360 Coils Coil 77 97 - -
Cmo01g00833 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo01g00833 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Cmo01g00833 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 359 - -
Cmo01g00833 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 Coils Coil 151 171 - -
Cmo01g00833 360 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00833 - - - csv:101220182 598.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00833 Cmo-Chr1:4449565 Cmo16g00738 Cmo-Chr16:3684983 9.88E-26 dispersed
Cmo01g00833 Cmo-Chr1:4449565 Cmo13g01195 Cmo-Chr13:9434322 0 wgd
Cmo01g00833 Cmo-Chr1:4449565 Cmo18g01160 Cmo-Chr18:11794852 9.34E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9064 PF00319 SRF-TF 1.00E-18 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00833 Cmo_Chr01 FPKM 7.408679 8.887733 12.741434 11.132585 11.140177 11.975001 12.441351 15.803256 14.671735 15.237913