Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00833 | ATGGGAAGGGTTAAGCTCAAAATAAAGAAATTGGAGAGCACCGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGGCATGGGATTTTGAAGAAAGCTCGGGAACTTGCTATACTCTGCGATATTGACATTGTTCTTCTCATGTTTTCGCCAACTGGAAGGCCCACGCTATATCAAGGTGAACGCAGCAACATTGAGGAGGTCATTACAAAGTTTTCTCAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTCGAAAGCCTTGAAGCGCTGAAGAAAACGTTTAAGAAGTTAGACCACGACGTAAACATAAAAGATTTTGTGGGTTCGAGCTCTCAAGATTCTGAGCAGGAATTGACCAATGAAGTTAGCATATTGCGAGATCAGATTGCTGATTCACATAAGAGACTGAGCTATTGGAGGAATCTTGATAATATCAACAATATAGAACATCTCCAGAAGATGGAAGATCTAGCAAGGGAATCCCTAAATCAAATGCGTCTACACAAGGAAAACGTAAGAAGACACCAAATACTCTCACAAGACTTCACTTGCCAGTATCCGGGTGGTGGGATGTCCTTACCTTTGATGATGGACGACATGCAAGGCACTCAACCCCTCTTATGGTTTCCCAACTATTGCAGTCAACAGATTGCTTTACCAACTGAGACTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCCATGGCTACATCGTTTTCGAGCTTTCCTAGTTTCTTCAACCCTGGGAAGCAACTTGAAGCAGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGGTTTAAATGAACTAAGTGGAACCTCTTGCTCAACTCTGCAACTTTGTGACCAATATCCATACCCTACGTGTGATGGTTCCAACTTCCAAGATGACAAGAAACTGAATCTTGAGATGGAGATGAACTTACATGCAAATTGCATAAATAATCAACTAAATGGCAAGTTGGAGCTCTCTAGAGCTCTATATGGTGATGACCAGCATCCTTGGGCTTCTATACCAGGGCCTTGTAGCATTCCAATGTATCAAAGCAATGCGTACCACCATCAACCAAATTGA | 1083 | 42.84 | MGRVKLKIKKLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGRPTLYQGERSNIEEVITKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDSEQELTNEVSILRDQIADSHKRLSYWRNLDNINNIEHLQKMEDLARESLNQMRLHKENVRRHQILSQDFTCQYPGGGMSLPLMMDDMQGTQPLLWFPNYCSQQIALPTETSFLQPGDVECSMATSFSSFPSFFNPGKQLEAGISGQVDSMPQGDGGLNELSGTSCSTLQLCDQYPYPTCDGSNFQDDKKLNLEMEMNLHANCINNQLNGKLELSRALYGDDQHPWASIPGPCSIPMYQSNAYHHQPN | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4449565 | 4452986 | + | CmoCh01G008330.1 | Cmo01g00833 | 374316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00833 | 360 | Coils | Coil | 77 | 97 | - | - | |
Cmo01g00833 | 360 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 359 | - | - | |
Cmo01g00833 | 360 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo01g00833 | 360 | Coils | Coil | 151 | 171 | - | - | |
Cmo01g00833 | 360 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 | 1 | 359 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00833 | Cmo-Chr1:4449565 | Cmo16g00738 | Cmo-Chr16:3684983 | 9.88E-26 | dispersed | |
Cmo01g00833 | Cmo-Chr1:4449565 | Cmo13g01195 | Cmo-Chr13:9434322 | 0 | wgd | |
Cmo01g00833 | Cmo-Chr1:4449565 | Cmo18g01160 | Cmo-Chr18:11794852 | 9.34E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9064 | PF00319 | SRF-TF | 1.00E-18 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00833 | - | - | csv:101220182 | 598.201 |