Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00833 ATGGGAAGGGTTAAGCTCAAAATAAAGAAATTGGAGAGCACCGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGGCATGGGATTTTGAAGAAAGCTCGGGAACTTGCTATACTCTGCGATATTGACATTGTTCTTCTCATGTTTTCGCCAACTGGAAGGCCCACGCTATATCAAGGTGAACGCAGCAACATTGAGGAGGTCATTACAAAGTTTTCTCAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTCGAAAGCCTTGAAGCGCTGAAGAAAACGTTTAAGAAGTTAGACCACGACGTAAACATAAAAGATTTTGTGGGTTCGAGCTCTCAAGATTCTGAGCAGGAATTGACCAATGAAGTTAGCATATTGCGAGATCAGATTGCTGATTCACATAAGAGACTGAGCTATTGGAGGAATCTTGATAATATCAACAATATAGAACATCTCCAGAAGATGGAAGATCTAGCAAGGGAATCCCTAAATCAAATGCGTCTACACAAGGAAAACGTAAGAAGACACCAAATACTCTCACAAGACTTCACTTGCCAGTATCCGGGTGGTGGGATGTCCTTACCTTTGATGATGGACGACATGCAAGGCACTCAACCCCTCTTATGGTTTCCCAACTATTGCAGTCAACAGATTGCTTTACCAACTGAGACTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCCATGGCTACATCGTTTTCGAGCTTTCCTAGTTTCTTCAACCCTGGGAAGCAACTTGAAGCAGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGGTTTAAATGAACTAAGTGGAACCTCTTGCTCAACTCTGCAACTTTGTGACCAATATCCATACCCTACGTGTGATGGTTCCAACTTCCAAGATGACAAGAAACTGAATCTTGAGATGGAGATGAACTTACATGCAAATTGCATAAATAATCAACTAAATGGCAAGTTGGAGCTCTCTAGAGCTCTATATGGTGATGACCAGCATCCTTGGGCTTCTATACCAGGGCCTTGTAGCATTCCAATGTATCAAAGCAATGCGTACCACCATCAACCAAATTGA 1083 42.84 MGRVKLKIKKLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGRPTLYQGERSNIEEVITKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDSEQELTNEVSILRDQIADSHKRLSYWRNLDNINNIEHLQKMEDLARESLNQMRLHKENVRRHQILSQDFTCQYPGGGMSLPLMMDDMQGTQPLLWFPNYCSQQIALPTETSFLQPGDVECSMATSFSSFPSFFNPGKQLEAGISGQVDSMPQGDGGLNELSGTSCSTLQLCDQYPYPTCDGSNFQDDKKLNLEMEMNLHANCINNQLNGKLELSRALYGDDQHPWASIPGPCSIPMYQSNAYHHQPN 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4449565 4452986 + CmoCh01G008330.1 Cmo01g00833 374316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00833 360 Coils Coil 77 97 - -
Cmo01g00833 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo01g00833 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Cmo01g00833 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 359 - -
Cmo01g00833 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g00833 360 Coils Coil 151 171 - -
Cmo01g00833 360 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00833 Cmo-Chr1:4449565 Cmo16g00738 Cmo-Chr16:3684983 9.88E-26 dispersed
Cmo01g00833 Cmo-Chr1:4449565 Cmo13g01195 Cmo-Chr13:9434322 0 wgd
Cmo01g00833 Cmo-Chr1:4449565 Cmo18g01160 Cmo-Chr18:11794852 9.34E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9064 PF00319 SRF-TF 1.00E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00833 - - csv:101220182 598.201