Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00834 ATGGGTGTTGTTGTAGCTCAGTTTTTGTTGGTCACCCTTTTTATTTTATGCTCCTTTGTCCATGGATATCGTGGAACCAGTTGGGTGAATGGCGCTCATGCTACTTTCTATGGAGGTCCCGATGCCTATGGCACATTGGGTGGGGCTTGTGGATATGGAAATGTATACAGCGAGAATTACGGGATTAAAACGACGGCGTTGAGTACAGCCTTGTACGACAATGGGCTGAGTTGTGGGGCTTGTTTTGAGGTCAAATGTGTGAACGACCCAAAATGGTGCCTCCCCGGCTCCGTCGTAGTCACCGCCACTAACTTCTGTCCTCCGGGCGGTTGGTGCGATCCTTCACTCCGCCATTTCGATCTCTCTCAACCTGCCTTCCAAAGCATCGCTCAAACAATCGCTGGAGTCGTTCCCGTTGCTTATCGAAGGGTTAGATGTGCAAGAAGGGGAGGAATTAAGTTCAGAATAGACGGAAATCCCTACTTCAATTTGGTACTCGTAAGCAATGTGGGAGGCGCAGGGGATGCTCATGCTGTTTACATTAAAGGGTCTAGGACTGGTTGGAGGGCCATGATCAGAAATTGGGGTCAAAACTGGCAGAGCAACGATTATCTTGTAGGACAATCCCTCTCTTTTAGGGTCATTACCGGTGATGGTCGCTCGGTTGTGTCCTACAATGTTGCCCCTTCTGGCTGGTCTTTTGGACAAACCTTTTACGGCAAACAATTTCTTAGAAGGAAAGCTTTGGATATGAACAAAATCAATCCAGGATTTCAAGACCAGTTTCCGGAGGGAAAAATGTCAATTGTCATGATCCAGGCTTCGGCTGCTGTCTTCCGGCCGAGCGCGTCAAGATCGAGGTTCCTTTTGGGGTCGTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTTAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGCTCCCAGGTTTGCCATCCCCAGCTTACCTTGATGGCAGTCTTCCAGGTGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTTGTGAACGGGCGATGGGCAATGCTTGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCCGAGTATTTTGCATCGTCGTCGACTCTCTTTGTGATCGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAGTACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAAGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATCATTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCATATATCAGATCCATGGCACAACACTATTGTCCAAACACTAAGGGGATAG 1554 46.98 MGVVVAQFLLVTLFILCSFVHGYRGTSWVNGAHATFYGGPDAYGTLGGACGYGNVYSENYGIKTTALSTALYDNGLSCGACFEVKCVNDPKWCLPGSVVVTATNFCPPGGWCDPSLRHFDLSQPAFQSIAQTIAGVVPVAYRRVRCARRGGIKFRIDGNPYFNLVLVSNVGGAGDAHAVYIKGSRTGWRAMIRNWGQNWQSNDYLVGQSLSFRVITGDGRSVVSYNVAPSGWSFGQTFYGKQFLRRKALDMNKINPGFQDQFPEGKMSIVMIQASAAVFRPSASRSRFLLGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4452811 4455781 - CmoCh01G008340.1 Cmo01g00834 374317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00834 517 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 267 517 - -
Cmo01g00834 517 SUPERFAMILY Chlorophyll a-b binding protein 319 515 - -
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cmo01g00834 517 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cmo01g00834 517 SMART dpbb_1 64 141 IPR007112 -
Cmo01g00834 517 Gene3D - 151 243 IPR036749 -
Cmo01g00834 517 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Cmo01g00834 517 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Cmo01g00834 517 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Cmo01g00834 517 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Cmo01g00834 517 SUPERFAMILY Barwin-like endoglucanases 28 169 IPR036908 -
Cmo01g00834 517 Pfam Lytic transglycolase 64 141 IPR009009 -
Cmo01g00834 517 Gene3D Chlorophyll a/b binding protein domain 329 508 - -
Cmo01g00834 517 Gene3D - 21 147 IPR036908 -
Cmo01g00834 517 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 267 517 IPR001344 GO:0009765|GO:0016020
Cmo01g00834 517 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Cmo01g00834 517 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Cmo01g00834 517 Pfam Chlorophyll A-B binding protein 329 488 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00834 Cmo-Chr1:4452811 Cmo10g00214 Cmo-Chr10:951009 1.04E-112 dispersed
Cmo15g00458 Cmo-Chr15:2086325 Cmo01g00834 Cmo-Chr1:4452811 5.63E-42 dispersed
Cmo18g00628 Cmo-Chr18:8027006 Cmo01g00834 Cmo-Chr1:4452811 1.95E-51 dispersed
Cmo12g00495 Cmo-Chr12:3032893 Cmo01g00834 Cmo-Chr1:4452811 3.76E-62 transposed
Cmo01g00834 Cmo-Chr1:4452811 Cmo10g00213 Cmo-Chr10:948889 9.33E-162 wgd
Cmo01g00834 Cmo-Chr1:4452811 Cmo11g00172 Cmo-Chr11:834931 1.75E-154 wgd
Cmo01g00834 Cmo-Chr1:4452811 Cmo15g00274 Cmo-Chr15:1315251 3.16E-113 wgd
Cmo01g00834 Cmo-Chr1:4452811 Cmo04g01748 Cmo-Chr4:8826880 1.11E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00834 K08910 - csv:101218675 486.493