Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00841 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGAGGCTGTGGTAGCGGGGTAAAGAGTGGGGGAGATGGGTTTATAGACAGGAGCAAAGTTAGGATTTTGCTGTGCGATAATGATTCCAAAAGTGCAGATGAGGTTTACAAGCTTCTTTTGAAATGTTCCTACCAAGTCATTTCCGTGAGTTCGGCTAGACAGGTCATTGATGCTTTGAATGCGGAAGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTACCAATGGCCAAAGGTATGAAAATGTTGAAGTACATCACTCGGGATAAAGAGCTGCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTTCCTATAGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCGTTACGAACAAATGAGCTATTAAACTTATGGACACACATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAGAACATCTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACAAATAGTACTACTTTGTTCTCGGATGACACAGATGACAAGTCACGTAGGAGCACAAATCCGGAGATGGGAATTGCAACACATCAGGAAGATGAGGTTGATAGTCCCACTACTAATCCCTACAATCGGTATTGCAAATGGGTCGAGAACGAACTATCTGGTATTGCTTCTGCACTGGTAGAGCTTCCTGCTGTTTATTCTGTGGAACATCAGCCAGATGTACCTGGAATTAGTGAGCGTCGAACAGGGCAACTTTTATCATGCCCTAGAAAGAGTGAACTAAAGATCGGTGAATCATCTGCATTCTTTACCTATGTCAAATCAAGAACTCTGAAAAACAAGGCAGTAGATGAAGAAGACAATGCCAAACGACTTTTGCTGGATGAGAATCATCAAAAAACTTGTCAGCACCCAGTTCGTCTTCCCCAAATACAAGAAAGTGGGGAGGCCTTGGAAACCCATTCACAAGGAGACGAATTCCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTATGGAGAAATCTTGTACGCCACCTGCTGGCTCAGAAGTTCACAGGGAAGGAAACATCAATGAAGAAAATCGCTCTCAAGTGCATGTGCATCCTCAAAATGGATCTCAACATGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCGTTCTATATGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACCTGCATGATATGCAAAATCGTGCGGCAATGATGTCACAATATGGTCAATTTCATCATTGTCCTCCCAATATAAGTGGTGTGGCATCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGTCAGCTTCTACTAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCAAAATCGAACAAATTGGATAGAAGAGAGGCTGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGTTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGAGGCCAGTTTGTTAGAAAGGTAAATGGTGTCAATGTAGATCTAAATGGACATCCTGCATCAGCTGATGATGTCGAGGATGAAGATGACGATGAGGAGCAACTATCAAGAGATTCCTCTCATGAAGATGATGTTTCAGGATATTAG 1722 42.04 MDCKELNLNEDCGGCGSGVKSGGDGFIDRSKVRILLCDNDSKSADEVYKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGIATHQEDEVDSPTTNPYNRYCKWVENELSGIASALVELPAVYSVEHQPDVPGISERRTGQLLSCPRKSELKIGESSAFFTYVKSRTLKNKAVDEEDNAKRLLLDENHQKTCQHPVRLPQIQESGEALETHSQGDEFPSSTSFPDSFSMEKSCTPPAGSEVHREGNINEENRSQVHVHPQNGSQHDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNRAAMMSQYGQFHHCPPNISGVASYPYYPMNICLQPGQMSASTNTHSWPSFGNSSSNEAKSNKLDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGHPASADDVEDEDDDEEQLSRDSSHEDDVSGY 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4482550 4487455 + CmoCh01G008410.1 Cmo01g00841 374324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00841 573 MobiDBLite consensus disorder prediction 464 486 - -
Cmo01g00841 573 SUPERFAMILY CheY-like 30 158 IPR011006 -
Cmo01g00841 573 ProSiteProfiles CCT domain profile. 490 532 IPR010402 GO:0005515
Cmo01g00841 573 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Cmo01g00841 573 MobiDBLite consensus disorder prediction 548 562 - -
Cmo01g00841 573 MobiDBLite consensus disorder prediction 536 573 - -
Cmo01g00841 573 MobiDBLite consensus disorder prediction 464 482 - -
Cmo01g00841 573 Gene3D - 32 218 - -
Cmo01g00841 573 MobiDBLite consensus disorder prediction 200 217 - -
Cmo01g00841 573 Pfam CCT motif 490 532 IPR010402 GO:0005515
Cmo01g00841 573 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Cmo01g00841 573 MobiDBLite consensus disorder prediction 329 356 - -
Cmo01g00841 573 SMART REC_2 32 147 IPR001789 GO:0000160
Cmo01g00841 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 550 IPR045279 GO:0009736
Cmo01g00841 573 MobiDBLite consensus disorder prediction 329 366 - -
Cmo01g00841 573 MobiDBLite consensus disorder prediction 177 217 - -
Cmo01g00841 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00841 Cmo-Chr1:4482550 Cmo02g01182 Cmo-Chr2:7085038 2.51E-15 dispersed
Cmo01g00841 Cmo-Chr1:4482550 Cmo11g00182 Cmo-Chr11:877863 0 wgd
Cmo01g00841 Cmo-Chr1:4482550 Cmo13g01203 Cmo-Chr13:9454384 3.25E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9066 PF00072 Response_reg 6.20E-17 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00841 K12127 - csv:101220107 936.406