Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00847 ATGGCGCTGTTTAGAAAATTGTTCTGCCGGAAGCCTCCAGATCGGCTTCTAGAGATGTCGGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACGGACGTCTTGGAAGAGGATGAATACAAAGTGTACTTTGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAGAACTTCAGATATATTGTCTCATTATGGTATGACAGTTATGGAGTATCCTCTGCAATATGAAGGGTGTCCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCCTCTGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACAAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTCTTATTGTACCGCAAACAATATGAGGGGGAGCAAAAGACCCTTGAATTGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTTCTCTCTCAGATAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAACCTAGGTTCTGATTGGCCTCCACCTGATTCACCTCTAATTTTAGAGTGTCTGATACTTCGGGACCTTCCGATGCTTGATGGAGGAAAAGGGTGCAGGCCTATCATACGCATTTACAGCCAGGACCCGTTAACACCACGAAATAAAAGTCCAAAACTTGCTTTTTCTAGTGCAAAGATGAAAAAACATGGTTGCCAGTATCTACAGGCAGCAAGCGGACTGGTAAAACTGGATGTCCATTGTCATGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGATGGTGATCTAATACACGAGGAAGTGATATTTAAAGTCATGTTTCACACGGCGTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGACGTTGATATTATATGGGATGCCAAGGGGCAGTTTCCTAAAGATTTTATAGTAGAGGTACTTTTTCTGGATCCTGATGATGCAGTGCCAAACGTCTCTCCTGTGACGAAAAGTGATGACAAAATTGAAATAGTAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATAGTTGACGTGCAGGAATACGATGTTCAAATGGTACATGCTAATGAAGTAGATGATATTGATCATCAAACAGTTTGGAAGGAAGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGGAGGGAGTCGTAACTTGGACAAGAAGATCGATTGTAACGTTGAAGCAGTGAAAGACATCACTGTCGATGATGTGACTTTCAAGCGAGATGAAAAAATGGACTCTGGTCTTCATGTAGTGAAGGACATTGTTATGGATTATTCAGATAAAAAGTCAAATCCTCCGCTATTTTCTGTTAACGTACTGAGACGCATGGGAATCAAGGAACTGATAGACGATGTGTACAACAAGTTGGAAGAGGTTGAGCATCAAGGGTATCTAGAAGATACTGCTATTCCAGACTTTGAATCGAATGTTCCTGCGAAAAAATTGGATTCTGATGCGTGGAGGCTTAAATATGAGAAGTTGCAGCCACTAGCATCTAGGAAACAGCCTTCGTCAACAGCTAAGCTATTAAATAATACAACCTTAGCTAAACAGAAGACCAAACAACCAGAAGATCAGGGCTCTCTTATTCAGGCAAAACCAAAAACTCTTTCTAGATGGACTCCACATGACAAAGAATCTTACATAAACTCCATGCATGTGTTTTATCCATCATCATGGCATACTGGTGCCTCAGCAACATGTATTAGTTCTCCTACTAGAGATTCTTATTCATATTCAACTTCAAAACCTGCTTCTATTACTTTAGGACTGCTGCTGTCAACTGATACAGCAGATGAACAAAACTGTAACATGGTGAGTCCTAGAAGGCCTTTATGTTGTTCTGCAACAGAGATTCCCACGAGTAAACCGCAATCCCCACTTGGCTCCCCAAAACAATTACCAAATGCTGTTCTGCATCAAGATCCTACTCTACGGTCACCAGTTCTTCATGCTAACACGTCTTTCTTGCATACATCATCTCCTAAATCTTCTTTGCCACCCTCTTCATATATTCACATAAATGCTAGATCTCCACCACCTCCACCACCACCACCACCACTACCTCCTCCACCTTCCAGTCACGTGGCCTCTAAAAGTTCAGCGTTGGTGCGTGGAAATGCACCTAAGCATAGAGCTCCACCAGTACCACCTCCACCTCCTGTACGTAAAGCTCAACCACAATTACCTCCCCCACAGCCACCCCGTTCACCTGGAGCTTTGCTTTCTCCACGCCTATCTAATGCTGGAGCTTTTCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAAAGCTCCTCCACATTTAACCCAAGGGCGACAGGCTTTAAAATCTCCAACAACCTGTGTGGTGTCATCATCATTGCCGTCTCCAATTTGTAATGTGCCATCACCTCCTCAACCTACGACAGGTCCCCTTCCACTGGTTCCTTCTCCTTCCAGACCTTCAGGAGGTATGTCTCCACACCCGGGAGCTAAAGGAGTAAATTCTTCAACTGATGTGAAAACATCATCTGTTGTGAGGGGACGTGGGTTCTCACGGTCATTGGGCACGGGGGTGGCTGCTACAGGACCTCAACGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATTTGGAGATCCTGAAAGTGCACCAGAATTTGATGTAGCTGAGCTGGAGACACTTTTCTCTGTGACTGTCCCTAAACCTATTGTTGATTCAGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGCGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGAATGCCACTGTCTGACATGATGATCTTTTTGTGCTTGTTCTCGTACTGCATTCTTACTGTTACTGAAATTTCTCACGCAGCAGTTCTCTCCATGGATGAATCGATATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAACTTCTCAAGGGATACTGTGGTGACAAGGAAAAACTCGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTGCCTCGTGTGGAGTCAAAGTTAAGAGTGTTCTCTTTTAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCAGTCTGTCAAGAGGTGAAGAACTCTTGCAAATTGAAGGAAATATTGAAGAGAATTCTTTGCCTGGGGAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCCATTGGATTCAGGTTGGATAGTCTCTCGAAACTCACTGATACTCGTGCTACTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTCCTCGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTAGTAGCTTGGAAGCTGCATCTAAGATACAATTGAAGTCTTTGGCGGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAAGAACTAGTTGCATCTGAAAGCGACGGCCCCATCTCCGAAGCTTTTCGTAAGACATTGAAAGGATTTGTTACTCTTGCCGAGAAGGAGGTGGAATCTGTGACCGTTCTTTACTCAGCGACGGGTAGAAATGCGGATGCACTTACACAATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTCTTCCATTTTACTCGTTCCTTTATGAAAGCACACGCAGAGAATTGCAGGCAGTTGGAAATGGAGATGAGAAGGCTGAGAAAATAA 3918 43.06 MALFRKLFCRKPPDRLLEMSERVYVFDCCFSTDVLEEDEYKVYFASIIPKLQDHFPDASFMVFNFSERKRKTRTSDILSHYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSSERQKNVLLMNCEQGGWPILAFMLSGLLLYRKQYEGEQKTLELVYRQAPRELFHVLSQINSQPSQMRYLQYISRRNLGSDWPPPDSPLILECLILRDLPMLDGGKGCRPIIRIYSQDPLTPRNKSPKLAFSSAKMKKHGCQYLQAASGLVKLDVHCHVQGDVVLECIHLDGDLIHEEVIFKVMFHTAFVHSNSLKLNRDDVDIIWDAKGQFPKDFIVEVLFLDPDDAVPNVSPVTKSDDKIEIVSNSTEEFFEVEEIFSNIVDVQEYDVQMVHANEVDDIDHQTVWKEDADPPTFQRCKSFGGSRNLDKKIDCNVEAVKDITVDDVTFKRDEKMDSGLHVVKDIVMDYSDKKSNPPLFSVNVLRRMGIKELIDDVYNKLEEVEHQGYLEDTAIPDFESNVPAKKLDSDAWRLKYEKLQPLASRKQPSSTAKLLNNTTLAKQKTKQPEDQGSLIQAKPKTLSRWTPHDKESYINSMHVFYPSSWHTGASATCISSPTRDSYSYSTSKPASITLGLLLSTDTADEQNCNMVSPRRPLCCSATEIPTSKPQSPLGSPKQLPNAVLHQDPTLRSPVLHANTSFLHTSSPKSSLPPSSYIHINARSPPPPPPPPPLPPPPSSHVASKSSALVRGNAPKHRAPPVPPPPPVRKAQPQLPPPQPPRSPGALLSPRLSNAGAFPPPPPPPPPIQKAPPHLTQGRQALKSPTTCVVSSSLPSPICNVPSPPQPTTGPLPLVPSPSRPSGGMSPHPGAKGVNSSTDVKTSSVVRGRGFSRSLGTGVAATGPQRSSLKPLHWSKVTRVLQGSLWEELQRFGDPESAPEFDVAELETLFSVTVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMIFLCLFSYCILTVTEISHAAVLSMDESILDVDQVENLIKFCPTKEEMELLKGYCGDKEKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFKKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRATNNKMTLMHYLCKVLASKSPSLLDFHLDLSSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISEAFRKTLKGFVTLAEKEVESVTVLYSATGRNADALTQYFGEDPARCPFEQVTGTLFHFTRSFMKAHAENCRQLEMEMRRLRK 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4495760 4503513 - CmoCh01G008470.1 Cmo01g00847 374330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00847 1305 Coils Coil 1286 1305 - -
Cmo01g00847 1305 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 654 674 - -
Cmo01g00847 1305 Gene3D Formin, FH2 domain 893 1296 IPR042201 -
Cmo01g00847 1305 SUPERFAMILY Formin homology 2 domain (FH2 domain) 791 1304 - -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 830 855 - -
Cmo01g00847 1305 ProSiteProfiles Formin homology-2 (FH2) domain profile. 891 1305 IPR015425 -
Cmo01g00847 1305 Pfam Formin Homology 2 Domain 896 1285 IPR015425 -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 712 732 - -
Cmo01g00847 1305 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cmo01g00847 1305 Coils Coil 1192 1212 - -
Cmo01g00847 1305 Gene3D Protein tyrosine phosphatase superfamily 15 203 IPR029021 -
Cmo01g00847 1305 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cmo01g00847 1305 SMART PTEN_C2_2 198 338 IPR014020 -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 656 670 - -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 811 829 - -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 694 878 - -
Cmo01g00847 1305 Gene3D - 204 336 - -
Cmo01g00847 1305 PANTHER FORMIN-J 1 1302 - -
Cmo01g00847 1305 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 188 IPR029021 -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 787 804 - -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 694 710 - -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 863 878 - -
Cmo01g00847 1305 SMART it6_source 891 1304 IPR015425 -
Cmo01g00847 1305 MobiDBLite consensus disorder prediction 749 777 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00847 Cmo-Chr1:4495760 Cmo11g00189 Cmo-Chr11:923749 2.86E-24 dispersed
Cmo11g00188 Cmo-Chr11:920830 Cmo01g00847 Cmo-Chr1:4495760 2.46E-10 transposed
Cmo01g00847 Cmo-Chr1:4495760 Cmo10g00227 Cmo-Chr10:985213 0 wgd
Cmo01g00847 Cmo-Chr1:4495760 Cmo11g00187 Cmo-Chr11:912910 2.11E-152 wgd
Cmo01g00847 Cmo-Chr1:4495760 Cmo13g01141 Cmo-Chr13:9242670 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00847 - - bhj:120083459 2019.2