Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00848 ATGGGGTGTGTCAACACGAAGCATGCCGTGTCCGTTACGCCTGCATTCGATCACTCCGGTGTGTTTCGGGACAATGAATCCACGGCGATCGGCAACTCGGGTCGGAGCCGACTTGGGTTTGGGGAGATTGACAAGGGTTCGAAGCCCAAGTCCAAGACGAGGACGAAAGGGTCCCGTGACTTCAATGGGGTTGCGAGCGAGTTCGGTGAGTCGGGTCGAGCGAGTTCTAACGGCGGTGGGAATGATACTTTGAGCTTCCGAATCGGGAATTTTAATAAGTATATGGAAAGTGAGCAAGTGGCGGCGGGATGGCCTGCTTGGCTCTGCGCCGTCGCCGGTGAAGCCATTCAGGGCTGGGTTCCACTCCGCTCTGATGCCTATGAAAAATTGGAGAAGATTGGACAAGGTACATATAGTACTGTATTCCGAGCACGTGAACTCGAGACAGGAAGGATAGTCGCTTTAAAGAAGGTCCGTTTCGATAATTTCGAGCCCGAAAGTGTTCGGTTTATGGCACGAGAGATCATGATTCTGCGCAGGCTTGATCACCCCAATATCATCAAATTGGAGGGCTTAATCACGTCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGATCATGACATTACTGGACTCTTGTCTTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTCGAGCATTGTCACTCACGTGGCGTAATGCATCGAGATATTAAAGGGTCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGTTTGGCAAACTTCTGTAATTCGGGGCACCGACAACCTCTAACCAGTCGTGTTGTCACGCTATGGTATCGTCCTCCTGAACTTCTACTCGGCTCAACGGACTACAATGCATCTGTGGATCTTTGGAGCGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCACATGCTACTTTGTTCAAACCACAACATCCTTACAATAATTGTTTACGACAGACGTTCAAAGATTATCCTTCGACGACCGTGAACTTGTTAGAAACTCTTCTTTCTGTCGAACCATACAAGCGCGGAGTTGCATCCTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCACACGCATGTGATCCATCAAGCATGCCAATATATCCACCAAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGCAGTGGAAGAACCCGTGGATTAGATAGCAGACGGTTAACTCGAAAGCATCTCGGAATCAGTAAATTAGCACCAGCAGAGGACTTATCGGTTTCAGCTCGAGATTTGCATAAGATTAGTATTAATGCTCAAAATCTTAAAGAAGAGAAGGTTATCAAAGGTGGTGAGGTGAAAAAGGTTTCAAATGATAAATTGGAAGAGTCTATGCATGTAAAGAATGCATCCCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCTACATCAAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGAAGCATCTATTAGATCGCATTCGAGATCAATTTCACGAGGACACGTAATTAATGGGCTGGATCATTCTGCTATATTGCATTCAAGAAGCAATGTGGACTCTAAGTTTCATGAAAAGGGAGACATGTTGTCCATCAGCTGTTCAAGTTCGAAGGGACGTGAATCAAACGAGAGATCCAAGGTTGTGATACGGAATCAATGGGGCAAGTTTGAGCGTCCCGATTCGTTTGATGCTTCGGATGAGTACCATTCGCAGGATTTTTCAGTGGCACTCTACTTGCAAGATGAAATGGAAGCTAAGAGGAGTAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATACTCTGGGCCCTTGTTATCTCAATCGAGCCGAGTGGATGAACTCCTAGACAGACACGAGAGGCACATCCGACAGACAGTTCGAAGATCGTGGTTCCAAAGAGGTAAAAATTGA 2091 45.72 MGCVNTKHAVSVTPAFDHSGVFRDNESTAIGNSGRSRLGFGEIDKGSKPKSKTRTKGSRDFNGVASEFGESGRASSNGGGNDTLSFRIGNFNKYMESEQVAAGWPAWLCAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSTVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPHACDPSSMPIYPPSKEIDAKQREESRRKKGSGRTRGLDSRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGGEVKKVSNDKLEESMHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDEASIRSHSRSISRGHVINGLDHSAILHSRSNVDSKFHEKGDMLSISCSSSKGRESNERSKVVIRNQWGKFERPDSFDASDEYHSQDFSVALYLQDEMEAKRSNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4506386 4511557 - CmoCh01G008480.1 Cmo01g00848 374331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00848 696 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Cmo01g00848 696 PANTHER CELL DIVISION PROTEIN KINASE 55 691 - -
Cmo01g00848 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cmo01g00848 696 MobiDBLite consensus disorder prediction 413 457 - -
Cmo01g00848 696 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cmo01g00848 696 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00848 696 CDD STKc_CDK9_like 127 411 - -
Cmo01g00848 696 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 55 691 - -
Cmo01g00848 696 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00848 696 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00848 696 MobiDBLite consensus disorder prediction 41 57 - -
Cmo01g00848 696 MobiDBLite consensus disorder prediction 431 457 - -
Cmo01g00848 696 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Cmo01g00848 696 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Cmo01g00848 696 MobiDBLite consensus disorder prediction 23 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00848 Cmo-Chr1:4506386 Cmo13g01141 Cmo-Chr13:9242670 0 dispersed
Cmo01g00848 Cmo-Chr1:4506386 Cmo15g00259 Cmo-Chr15:1251813 0 wgd
Cmo01g00848 Cmo-Chr1:4506386 Cmo04g02916 Cmo-Chr4:20692719 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74036 PF00069 Pkinase 7.10E-69 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00848 - - csv:101220347 1259.2