Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00876 ATGGGTAATAGCCTAATGTGCAAGTCAAAGAAGGACGTGAAAGAGAATGGATCTAGAAGTAAGAGAATAGGTCGGTCTCAAAGGAAGTTGCAGAGTGAAGAAGAGTATTTGCAGAAGCAAGCTCTTTCGTTGGCTCTTCATCAGCTCCAATTATCTCAGAGGTTCGATGGATCCACTTCGAAGAGAATTGGGTCGACTAGCTCTCGTAGACGCAATCTCTCCGATCCATTCTCTAATGGAAAGCAGAGTCAGAGCAAGAGAGATTCAAAGTTGTGTGGAGCAGCAGATGTGAGTTCAAGTGAAGCAAATCCGCAGGCAGCAGATTTTCTGGAAAATGTGAAGGAAAAGAAATTTGTTTTAGTTCATGGTGAAGGGTTTGGAGCTTGGTGCTGGTACAAAACCATTTCTCTACTAGAGGAATCTGGATTGTCGCCCGTAGCGATTGATCTCAAAGGTTCCGGTATCGATCTAACCGATACAAATGGGGTGAATACTCTAGCAGAGTATTCAAAGCCATTGACTGATTATCTTCAAGATCTTCCTAATGATGAAAAGGTTGTTCTAGTTGGGCACAGTAGTGGAGGTGCTTGTCTTTCGTATGCATCGGAACATTTCTCGAATAAAATAGCGAAAGCAGTTTACGTGTGTGCAACGATGGTGGCTGATGGACAGAGACCTTTTGATGTATTCATGGAAGAGATTGGATCAAAAGAGATTTTTATGAAAGACTCTAAGAATTTGATGTATGGGAAGGGAAAAGACAAACCTCCTACAGGATTCATGTTTGAGAAAGAACAAATGAAGGGGTTATACTTTAATCAATCTCCTACAAAGGATGTTGCTTTGGCTATGGTTTCCATGAGACCTTTCCCACTGGGTCCAGTCATGGAGAAGCTCTCACTGTCGCCCCAAAACTATGGAAGCGGGCGTCGATTCTTCGTTCAAACGCTCGATGATCGTGCACTCTCACCTGATGTTCAAGAAAAGCTGGTGAGGGAAAACCCACCAGAAAGAGTTTTCAAGATCAAAGGCAGTGATCATTGTCCATTTTTCTCTAAGCCACAGTCACTGCACAAGATCCTCCTGGAAATCGCTCAAATACCATAA 1107 43.0 MGNSLMCKSKKDVKENGSRSKRIGRSQRKLQSEEEYLQKQALSLALHQLQLSQRFDGSTSKRIGSTSSRRRNLSDPFSNGKQSQSKRDSKLCGAADVSSSEANPQAADFLENVKEKKFVLVHGEGFGAWCWYKTISLLEESGLSPVAIDLKGSGIDLTDTNGVNTLAEYSKPLTDYLQDLPNDEKVVLVGHSSGGACLSYASEHFSNKIAKAVYVCATMVADGQRPFDVFMEEIGSKEIFMKDSKNLMYGKGKDKPPTGFMFEKEQMKGLYFNQSPTKDVALAMVSMRPFPLGPVMEKLSLSPQNYGSGRRFFVQTLDDRALSPDVQEKLVRENPPERVFKIKGSDHCPFFSKPQSLHKILLEIAQIP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4759147 4761848 + CmoCh01G008760.1 Cmo01g00876 374359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00876 368 MobiDBLite consensus disorder prediction 57 97 - -
Cmo01g00876 368 PANTHER METHYLESTERASE 14, CHLOROPLASTIC-RELATED 25 367 - -
Cmo01g00876 368 MobiDBLite consensus disorder prediction 1 31 - -
Cmo01g00876 368 MobiDBLite consensus disorder prediction 8 31 - -
Cmo01g00876 368 MobiDBLite consensus disorder prediction 57 89 - -
Cmo01g00876 368 Gene3D alpha/beta hydrolase 110 366 IPR029058 -
Cmo01g00876 368 SUPERFAMILY alpha/beta-Hydrolases 118 364 IPR029058 -
Cmo01g00876 368 Pfam Alpha/beta hydrolase family 118 355 IPR000073 -
Cmo01g00876 368 PANTHER METHYLESTERASE FAMILY MEMBER 25 367 IPR045889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00876 - - - cmax:111471963 715.301
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00876 Cmo09g01322 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00876 Cmo-Chr1:4759147 Cmo15g00245 Cmo-Chr15:1211544 9.07E-95 dispersed
Cmo15g00190 Cmo-Chr15:871538 Cmo01g00876 Cmo-Chr1:4759147 6.51E-48 transposed
Cmo01g00876 Cmo-Chr1:4759147 Cmo04g02935 Cmo-Chr4:20787727 2.98E-81 wgd
Cmo01g00876 Cmo-Chr1:4759147 Cmo09g01322 Cmo-Chr9:11950989 4.38E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1636 . . . . . . . . . . Cma01g00836 . Car01g00775 . . Cpe06g01012 . . . . . . . . Cla08g00040 Cam08g0039 Cec08g0213 Cco08g0092 Clacu08g0055 Cmu08g0053 Cre08g0043 . . . . . . . Cme09g00023 . . . . . . . . Sed06g0856 Cmo01g00876 Cmo09g01322 . . . Car09g01152 . Cpe02g01023 Bhi06g00240 Tan10g2040 Cmetu09g0728 . Hepe02g3268 . Lcy10g2140 . . . . . . . Lsi08g00030 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010779 0 1 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00876 Cmo_Chr01 FPKM 1.04023 0.824594 0.352561 0.450206 2.358159 2.498979 2.649948 0.0 0.077288 0.0