Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00877 ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGATGATGATGATGGTGATTTCCCGATGTTTTGGAGACTTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATAGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATACGCACCTTCACAGCGTGTTCCGAGGTCATCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTGCTGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTCGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAGAAGAGGTGTTGCCGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAA 1776 44.31 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKRIAEVERLHQANMESGQELNAIQALASRNFFSPNIMEDDDDGDFPMFWRLQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKDDGSLNPNEGKPSRRGVAGGHEKQVWVQKSSSGS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4761861 4772193 - CmoCh01G008770.1 Cmo01g00877 374360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00877 591 MobiDBLite consensus disorder prediction 525 543 - -
Cmo01g00877 591 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 Gene3D - 119 209 IPR012677 -
Cmo01g00877 591 MobiDBLite consensus disorder prediction 442 481 - -
Cmo01g00877 591 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 158 284 IPR039722 GO:0000184
Cmo01g00877 591 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 284 590 IPR039722 GO:0000184
Cmo01g00877 591 MobiDBLite consensus disorder prediction 390 437 - -
Cmo01g00877 591 Pfam Smg-4/UPF3 family 158 278 IPR005120 -
Cmo01g00877 591 MobiDBLite consensus disorder prediction 287 308 - -
Cmo01g00877 591 SUPERFAMILY SRF-like 2 65 IPR036879 GO:0003677|GO:0046983
Cmo01g00877 591 ProSiteProfiles K-box domain profile. 39 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00877 591 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Cmo01g00877 591 Coils Coil 76 115 - -
Cmo01g00877 591 Pfam K-box region 59 118 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo01g00877 591 SUPERFAMILY RNA-binding domain, RBD 159 207 IPR035979 GO:0003676
Cmo01g00877 591 MobiDBLite consensus disorder prediction 489 507 - -
Cmo01g00877 591 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 158 284 - -
Cmo01g00877 591 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 284 590 - -
Cmo01g00877 591 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 CDD RRM_like_Smg4_UPF3 159 204 - -
Cmo01g00877 591 MobiDBLite consensus disorder prediction 291 305 - -
Cmo01g00877 591 MobiDBLite consensus disorder prediction 510 524 - -
Cmo01g00877 591 MobiDBLite consensus disorder prediction 390 591 - -
Cmo01g00877 591 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo01g00877 591 MobiDBLite consensus disorder prediction 355 375 - -
Cmo01g00877 591 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00877 Cmo-Chr1:4761861 Cmo03g01352 Cmo-Chr3:9999265 1.07E-51 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo01g00877 Cmo-Chr1:4761861 2.84E-29 dispersed
Cmo01g00877 Cmo-Chr1:4761861 Cmo09g01321 Cmo-Chr9:11943632 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9070 PF03467 Smg4_UPF3 2.00E-34 CL0221 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00877 K14328 - csv:101208317 727.243