Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00886 | ATGAATGTTCTAAGAATAGAGAGGCAGCCATTAGAATCAGTTAAAGAATTCGCCATTTTTGCAAGGAGTAACGATTTGAGCACGACAGTACTGCAATGCACGTCTTGCGGCAGTCGCGCACCCAGAGAAGGAAAACCAATCTTCGGTTCTTCTTCCTCACTGTCTATGGAAGGACCAGAAGATAGCAGTCAGAAAGAGTCTAGAACGGGAAAAGATGTGAACAAATCATCAGTTCAATTGGTTGCTCCTTCTCCCTCTAAAGGAGAGGATTTGTTGTCAGAGATTAAGTTGTCAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATCAAACAAAGGCCAATGGAGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTCCATCGAGCAAGGGAGGACGATGAATCCATTAAGCCTGCAAAAGCAAAAGCAGATAATACTTCGGCAGCTGGAAGAAAGCCCGACATTTTTAGGTTAGCTAGCTTGTCTAAAGTTGCAGAAGCTGAATATGTGATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATTAAAGGGTGGGTTCCCCGCCGGATTGACTCCTTTGAGAAGTTAGAAAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGAGACCTTGAAACTGGAAAAACCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCGAGAAAGTGTCCGTTTTATGGCCAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACTTCCAAAATGTCGGGTAGCTTGCACCTTGTTTTCGAGTACATGGACCATGACCTTGCAGGCCTTGCTGCAGCTCCTGGACATAAGTTTTCTGAGGCTCAGATTAAATGTTATGTGCAACAATTGATGCAAGGACTCGAACACTGTCATAGTCGAGGAATTCTGCACCGAGATATCAAAGGTTCAAATCTTCTCATTGACGATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTAGCTACCTGTTTTCAACCCGATCAAAAGCAGCCATTGACGAGTCGGGTGGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGATGTATCGTTGCTGAACTATTTGCTGGAAAGCCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCGTCCGAGGAGTTCTGGCGGAGAACAAAGTTGCCACTTTCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCATTTCTGAAACATTCAAAAGTTTCCCTCCTCCAGCTCTGGCTCTTGTTAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCCGCTGCCGAAGTTCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCTTCAAGCTTACCAAAATATCCTCCAAGCAAGGAATTCGATGCCAAGCTCCGGAATGAAGAAGAAAGAAAGAGAAAAGCAGAAGCTGTGAAGGGACATCATCCCGAATCAGTAAGAAGGGGCTTGAGAGACACCAAGGCTGCTCCGACTCCCGAGTTCAACACTCAAGGAGACTATACGATTAAGGTACACCCGATTGCTAAAAAGATGAGTATGAAATACAACCCTCAAGAGGACGGTGAGCCTCCTAGAGTTGCTCAGAGTCGGTACACCCACTCAACATCTATGGTGCACCCGACTATTGCAAGTTCATGGTGTAAGCCCACCGGGGCATCAAGAAATTGTGCAGATTTGAGGACACAGAAATCTCAGATGCATCAGACAGTGGGCGATTCGGCAACCTCTTCGCTTACGAAGGACTCTAAAGATTCTGGAATGGGATATGTGCAAAAGAAGAACAGAATACATTACTCGGGACCGTTAGTGCCTGCAGGAGGAAGCATTATTGAAGACATGCTGAAAGAGCATGAGAGACAAATCCAGCAGGCTTTTAGAAAGGCGAAGACGAATAAGAGTTATGATGAGCTTTAA | 2067 | 44.8 | MNVLRIERQPLESVKEFAIFARSNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEGPEDSSQKESRTGKDVNKSSVQLVAPSPSKGEDLLSEIKLSRQASKANGGSVHQTKANGGSVHKTKANGGSVHRAREDDESIKPAKAKADNTSAAGRKPDIFRLASLSKVAEAEYVMAGWPSWLASVAGEAIKGWVPRRIDSFEKLEKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDRESVRFMAREIYILRKLDHPNVMKLEGLVTSKMSGSLHLVFEYMDHDLAGLAAAPGHKFSEAQIKCYVQQLMQGLEHCHSRGILHRDIKGSNLLIDDNGVLKIGDFGLATCFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPLSTSFKPQHRYKSCISETFKSFPPPALALVNKLLAIEPEHRGSAAEVLRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKRKAEAVKGHHPESVRRGLRDTKAAPTPEFNTQGDYTIKVHPIAKKMSMKYNPQEDGEPPRVAQSRYTHSTSMVHPTIASSWCKPTGASRNCADLRTQKSQMHQTVGDSATSSLTKDSKDSGMGYVQKKNRIHYSGPLVPAGGSIIEDMLKEHERQIQQAFRKAKTNKSYDEL | 688 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4835903 | 4839682 | - | CmoCh01G008860.1 | Cmo01g00886 | 374369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00886 | 688 | CDD | STKc_CDK9_like | 200 | 484 | - | - | |
Cmo01g00886 | 688 | ProSiteProfiles | Protein kinase domain profile. | 200 | 484 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo01g00886 | 688 | PANTHER | CELL DIVISION PROTEIN KINASE | 144 | 681 | - | - | |
Cmo01g00886 | 688 | SMART | serkin_6 | 200 | 484 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo01g00886 | 688 | ProSitePatterns | Protein kinases ATP-binding region signature. | 206 | 229 | IPR017441 | GO:0005524 | |
Cmo01g00886 | 688 | Pfam | Protein kinase domain | 200 | 484 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 513 | 532 | - | - | |
Cmo01g00886 | 688 | SUPERFAMILY | Protein kinase-like (PK-like) | 193 | 492 | IPR011009 | - | |
Cmo01g00886 | 688 | Coils | Coil | 502 | 522 | - | - | |
Cmo01g00886 | 688 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 320 | 332 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo01g00886 | 688 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 144 | 681 | - | - | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 615 | 638 | - | - | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 36 | 151 | - | - | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 127 | 143 | - | - | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 98 | 122 | - | - | |
Cmo01g00886 | 688 | Gene3D | Transferase(Phosphotransferase) domain 1 | 283 | 524 | - | - | |
Cmo01g00886 | 688 | MobiDBLite | consensus disorder prediction | 615 | 635 | - | - | |
Cmo01g00886 | 688 | Gene3D | Phosphorylase Kinase; domain 1 | 187 | 282 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00886 | Cmo-Chr1:4835903 | Cmo04g00583 | Cmo-Chr4:2911153 | 0 | dispersed | |
Cmo20g00018 | Cmo-Chr20:154242 | Cmo01g00886 | Cmo-Chr1:4835903 | 3.19E-120 | dispersed | |
Cmo01g00886 | Cmo-Chr1:4835903 | Cmo09g01297 | Cmo-Chr9:11502373 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74037 | PF00069 | Pkinase | 3.50E-70 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00886 | K08819 | - | csv:101208709 | 1046.57 |