Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00886 ATGAATGTTCTAAGAATAGAGAGGCAGCCATTAGAATCAGTTAAAGAATTCGCCATTTTTGCAAGGAGTAACGATTTGAGCACGACAGTACTGCAATGCACGTCTTGCGGCAGTCGCGCACCCAGAGAAGGAAAACCAATCTTCGGTTCTTCTTCCTCACTGTCTATGGAAGGACCAGAAGATAGCAGTCAGAAAGAGTCTAGAACGGGAAAAGATGTGAACAAATCATCAGTTCAATTGGTTGCTCCTTCTCCCTCTAAAGGAGAGGATTTGTTGTCAGAGATTAAGTTGTCAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATCAAACAAAGGCCAATGGAGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTCCATCGAGCAAGGGAGGACGATGAATCCATTAAGCCTGCAAAAGCAAAAGCAGATAATACTTCGGCAGCTGGAAGAAAGCCCGACATTTTTAGGTTAGCTAGCTTGTCTAAAGTTGCAGAAGCTGAATATGTGATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATTAAAGGGTGGGTTCCCCGCCGGATTGACTCCTTTGAGAAGTTAGAAAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGAGACCTTGAAACTGGAAAAACCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCGAGAAAGTGTCCGTTTTATGGCCAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACTTCCAAAATGTCGGGTAGCTTGCACCTTGTTTTCGAGTACATGGACCATGACCTTGCAGGCCTTGCTGCAGCTCCTGGACATAAGTTTTCTGAGGCTCAGATTAAATGTTATGTGCAACAATTGATGCAAGGACTCGAACACTGTCATAGTCGAGGAATTCTGCACCGAGATATCAAAGGTTCAAATCTTCTCATTGACGATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTAGCTACCTGTTTTCAACCCGATCAAAAGCAGCCATTGACGAGTCGGGTGGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGATGTATCGTTGCTGAACTATTTGCTGGAAAGCCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCGTCCGAGGAGTTCTGGCGGAGAACAAAGTTGCCACTTTCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCATTTCTGAAACATTCAAAAGTTTCCCTCCTCCAGCTCTGGCTCTTGTTAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCCGCTGCCGAAGTTCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCTTCAAGCTTACCAAAATATCCTCCAAGCAAGGAATTCGATGCCAAGCTCCGGAATGAAGAAGAAAGAAAGAGAAAAGCAGAAGCTGTGAAGGGACATCATCCCGAATCAGTAAGAAGGGGCTTGAGAGACACCAAGGCTGCTCCGACTCCCGAGTTCAACACTCAAGGAGACTATACGATTAAGGTACACCCGATTGCTAAAAAGATGAGTATGAAATACAACCCTCAAGAGGACGGTGAGCCTCCTAGAGTTGCTCAGAGTCGGTACACCCACTCAACATCTATGGTGCACCCGACTATTGCAAGTTCATGGTGTAAGCCCACCGGGGCATCAAGAAATTGTGCAGATTTGAGGACACAGAAATCTCAGATGCATCAGACAGTGGGCGATTCGGCAACCTCTTCGCTTACGAAGGACTCTAAAGATTCTGGAATGGGATATGTGCAAAAGAAGAACAGAATACATTACTCGGGACCGTTAGTGCCTGCAGGAGGAAGCATTATTGAAGACATGCTGAAAGAGCATGAGAGACAAATCCAGCAGGCTTTTAGAAAGGCGAAGACGAATAAGAGTTATGATGAGCTTTAA 2067 44.8 MNVLRIERQPLESVKEFAIFARSNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEGPEDSSQKESRTGKDVNKSSVQLVAPSPSKGEDLLSEIKLSRQASKANGGSVHQTKANGGSVHKTKANGGSVHRAREDDESIKPAKAKADNTSAAGRKPDIFRLASLSKVAEAEYVMAGWPSWLASVAGEAIKGWVPRRIDSFEKLEKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDRESVRFMAREIYILRKLDHPNVMKLEGLVTSKMSGSLHLVFEYMDHDLAGLAAAPGHKFSEAQIKCYVQQLMQGLEHCHSRGILHRDIKGSNLLIDDNGVLKIGDFGLATCFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPLSTSFKPQHRYKSCISETFKSFPPPALALVNKLLAIEPEHRGSAAEVLRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKRKAEAVKGHHPESVRRGLRDTKAAPTPEFNTQGDYTIKVHPIAKKMSMKYNPQEDGEPPRVAQSRYTHSTSMVHPTIASSWCKPTGASRNCADLRTQKSQMHQTVGDSATSSLTKDSKDSGMGYVQKKNRIHYSGPLVPAGGSIIEDMLKEHERQIQQAFRKAKTNKSYDEL 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4835903 4839682 - CmoCh01G008860.1 Cmo01g00886 374369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00886 688 CDD STKc_CDK9_like 200 484 - -
Cmo01g00886 688 ProSiteProfiles Protein kinase domain profile. 200 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00886 688 PANTHER CELL DIVISION PROTEIN KINASE 144 681 - -
Cmo01g00886 688 SMART serkin_6 200 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00886 688 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524
Cmo01g00886 688 Pfam Protein kinase domain 200 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00886 688 MobiDBLite consensus disorder prediction 513 532 - -
Cmo01g00886 688 SUPERFAMILY Protein kinase-like (PK-like) 193 492 IPR011009 -
Cmo01g00886 688 Coils Coil 502 522 - -
Cmo01g00886 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Cmo01g00886 688 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 144 681 - -
Cmo01g00886 688 MobiDBLite consensus disorder prediction 615 638 - -
Cmo01g00886 688 MobiDBLite consensus disorder prediction 36 151 - -
Cmo01g00886 688 MobiDBLite consensus disorder prediction 127 143 - -
Cmo01g00886 688 MobiDBLite consensus disorder prediction 98 122 - -
Cmo01g00886 688 Gene3D Transferase(Phosphotransferase) domain 1 283 524 - -
Cmo01g00886 688 MobiDBLite consensus disorder prediction 615 635 - -
Cmo01g00886 688 Gene3D Phosphorylase Kinase; domain 1 187 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00886 Cmo-Chr1:4835903 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo20g00018 Cmo-Chr20:154242 Cmo01g00886 Cmo-Chr1:4835903 3.19E-120 dispersed
Cmo01g00886 Cmo-Chr1:4835903 Cmo09g01297 Cmo-Chr9:11502373 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74037 PF00069 Pkinase 3.50E-70 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00886 K08819 - csv:101208709 1046.57