Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00895 ATGGGGAGACACGGCGCGGCAACGTCGATCTACCGAGGAGTTCGCAAGCGTAAATGGGGCAAATGGGTGTCCGAGATTCGCGAACCGGGAAAGAAGACGAGAATATGGTTAGGTAGCTTCGAGACACCGGAGATGGCAGCGGCAGCCTACGACGTTGCTGCCTACCATTTCCGTGGTCGCGACGCACGTCTCAATTTCCCTAATCTTGTCGACTCTCTTCCCTTACCTCTTGGTTCTTCCTCTGATGACATCCGCCTTGCTGCTCACGAGGGAGCGTTGCGATTACGAACAACGCCAACCGTTGTGCCTGAGAGAAATGGAACCGGTGGGTTGGGACTGGCCCCGGTCACAGTGCGGTTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGATTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGGTGATGGAGGAGTATTCAAATGAGGATGAAATGTGGGAGAATATGCAGAATGATTCGCTGTGGGATCCTTAG 513 54.0 MGRHGAATSIYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPNLVDSLPLPLGSSSDDIRLAAHEGALRLRTTPTVVPERNGTGGLGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLVMEEYSNEDEMWENMQNDSLWDP 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4978025 4978537 + CmoCh01G008950.1 Cmo01g00895 374378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00895 170 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Cmo01g00895 170 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cmo01g00895 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 169 - -
Cmo01g00895 170 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Cmo01g00895 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 4 169 - -
Cmo01g00895 170 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Cmo01g00895 170 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Cmo01g00895 170 CDD AP2 9 69 IPR001471 GO:0003700|GO:0006355
Cmo01g00895 170 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Cmo01g00895 170 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00895 Cmo-Chr1:4978025 Cmo09g01282 Cmo-Chr9:11322679 8.54E-85 dispersed
Cmo01g00895 Cmo-Chr1:4978025 Cmo01g00896 Cmo-Chr1:4988566 2.08E-48 tandem
Cmo01g00895 Cmo-Chr1:4978025 Cmo09g01277 Cmo-Chr9:11275482 1.31E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9071 PF00847 AP2 4.20E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00895 - - csv:101207243 263.462