Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00896 ATGGAACCCACTTACAGAGGCGTTCGTAAGCGCAAATGGGGGAAATGGGTCTCGGAAATCCGCCAACCCGGCAAAAAAACCCGAATCTGGCTCGGCAGTTACGACTTCCCGGCGATGGCCGCTGCCGCATACGACGTCGCCGCACTCCACCTCCGTGGACGTAACGCCCAGCTTAACTTCCCCGAGCTGGCCGAGACCTTCCCCCGGCCTGAGAGTTCGAGGGCAGAGGACATTCAGAGTGCGGCGCAGATGGCTGCATTGCGAATGAGGAACCCGGTCGGGGCGGCGCCATTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACGATGTGGATGCAGATGGCGGCGGAGGCGGAGGCAGTTTGTTTGGAGGAAGAGTCGGGGTTTGATGAGGGGGAGGATAACATCACGACGCATCATTCTATATGGGATTCTTGA 471 58.81 MEPTYRGVRKRKWGKWVSEIRQPGKKTRIWLGSYDFPAMAAAAYDVAALHLRGRNAQLNFPELAETFPRPESSRAEDIQSAAQMAALRMRNPVGAAPFRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEESGFDEGEDNITTHHSIWDS 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4988566 4989036 + CmoCh01G008960.1 Cmo01g00896 374379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00896 156 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Cmo01g00896 156 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 155 - -
Cmo01g00896 156 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Cmo01g00896 156 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Cmo01g00896 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00896 Cmo-Chr1:4988566 Cmo09g01277 Cmo-Chr9:11275482 9.81E-61 dispersed
Cmo01g00895 Cmo-Chr1:4978025 Cmo01g00896 Cmo-Chr1:4988566 2.08E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9072 PF00847 AP2 2.30E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00896 - - cmax:111471982 286.574