Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00908 ATGGCGTTGAATATGAAAACTCTCACCCAAGCCTTGGCCAAGACCGCCGCGGTGATCGAGAAAACCGTTCAGACCACCGTCCAAGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGATCTTATCGATCAGATCGGCTCCGCCGGTCCTGGCATGGCTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGTCTCAACAATATCCCGCTGTTTGCGTATGGGTTTTGGATAAGAGGGTTCTATCGGAGGCTAGGGCTCGCGCGGGGTTGTCAAAGTCTGCTGAGGATTCGTTTTTGGATCTGATTCGATCCGATGCGGGGCGGTTGGTGAAGCTGAGGCATCCGGGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAATAAGAATGCCATGGCTATGGTTACCGAGCCGCTGTTTGCTTCGGTGGCAAATGTTGTTGGGAATCTGGAGAATGTTGCTAAGGTTCCTAATGAGCTCAAAGATTTGGAAATGGGATTACTGGAAATAAAGCATGGTTTGTTTCAGATAGCTGAATCTTTGAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTCCTGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGTCGATCAGACTTCGAGTGACATGACTGCCATGCAGGGTTTCCACTACTCAGAGTATGACGTTGAAGATTCTGTGCTACCTCTTCAGCCATCGCTGAATTATACTGCTCCTGAGTTGGTCAAAAGTAAATCATCTTTGGCTGGAAGTTCCTCTGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGGTTGCTAGAAAGCCTCTGTTTGACTGCTTCAACAATGTTAAAATGTACATGAATTCCTTAACTTACCTGTCAACTGAGTCGTTTGCTTCAATTCCTCGGGAGTTAGTTCCTGATTTGCAAAGAATGCTCTCATCAAATGAGTCTCTCCGGCCAACAGCAATGACGTTCACAGATTCCCCATTTTTTCGGGATGACACAAGGCTGCGTGCTATTCGCTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTCTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTCTGTGCAGAATTACGTAATATGGTTATACAACCTATAATTCTTCCCATGGTATTCACAATAGCAGAGTCTCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGACACATTGTTGCTGCTTGTGAAGCGTGCCGATCTTATTATTAACAAGACCAATCAAGAAGCATTAATAACAAGTGTCCTGCCATTGATTATTCGGGCTTATGATGATAATGATGCTCGCATACAAGAGGAAGGTCTGAGAAAATCAGTTTCCCTTGCCAAGCAACTTGATACACAGTTAGTGAAACAAACAATTTTGCCTCGTGTTCACACCTTAGCTCTAAAGACGACAGTTGCTGCGGTCAGAGTCAATGCTTTGCTCTGCTTTGGAGAATTGGTTCCGACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTTGACCGTTCTGCTCCTACTCTCATGTGTACCCTTGGGGTTGCAAATTCAATCCTTAAGCAGTATGGAATTGAATTTGTTGCGGAGCATGTTCTTCCTTTACTCGCACCTCTTCTTACAGCCCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGACATTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCACTGTTTCTGATTCTGGAGTATCAGGAATAAAACCCTCTCTGAATTCTAATGGCTCACAGTCACAATCATCAAGCACAGCAAGTGATGTCTCGGTTCCAACAATAAAAAGTCGACCTGCTTGGGACGAAGATTGGGGCCCGACTTCTAAGACACCTGCATCCTCACAAAGTTCTACTGGCAATGTCTTGTCTGCTCCTGTTGTTCTTAGTGGTCAATCCATAGCTGGAAACTCTATACAAACAAATTCTGTTGTGACGACATCTCTGTCTAGTAATCAAACTGTTGCATCCTGTCTTCCAGTTGATATTGAATGGCCTCCTCAGAACTCTACCAGTAGTACACCCATAATAGCTGATTCTGGGATGCAAGCAACTACAGGATCATCATCCACTTCAAGCTTGGATGGCGAGGACCCTTTTGCTGACTGGCCCCCACGTCCTAGTGGATCATTAGCAGGTGCATCAGGAGCTTCGAACAACGGAGTGGTCGGACCATCCAAGAACAAATATGGAACTGGTTCATCCATGACTACACCGAACAGTTTGAACTTTCAAACAAACGACAGTGCTAGTTGGACCCTCAACAACCAAAATACTAGTGAACCAATGATACAAAATCATGGAACTTCGACTTTCAATTCAAGCAGTCCGGGGAGTGGAGGCATCAATTCCCTAAATTCTATTGGATTCCAGAAGCAAAATCAGGGAATACCATCCCAGCTTACTTATGATGCCGACAAGAAATCCACTGATCTTGGATCCATATTTGCGCCAAGTAAGAGTGATCATAATATTGCACCTAGACTTGCCCCACCCCCCACAACTGCTATTGGTAGAGGAAGAGGAAGAGGGAGGGGGGTTTCCTCAACACTTCGTTCTACTCAAAACAAATCATCATCTGGGCAACCTCCCCTGATGGATTTGCTGTAG 2796 44.53 MALNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYDLIDQIGSAGPGMAWKLYSAKARDSSRSQQYPAVCVWVLDKRVLSEARARAGLSKSAEDSFLDLIRSDAGRLVKLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVVGNLENVAKVPNELKDLEMGLLEIKHGLFQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPVDQTSSDMTAMQGFHYSEYDVEDSVLPLQPSLNYTAPELVKSKSSLAGSSSDIFSFGCLAYHLVARKPLFDCFNNVKMYMNSLTYLSTESFASIPRELVPDLQRMLSSNESLRPTAMTFTDSPFFRDDTRLRAIRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNMVIQPIILPMVFTIAESQDKHDFELSTLPSLVPVLSTASGDTLLLLVKRADLIINKTNQEALITSVLPLIIRAYDDNDARIQEEGLRKSVSLAKQLDTQLVKQTILPRVHTLALKTTVAAVRVNALLCFGELVPTLDKHAVLEILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGIEFVAEHVLPLLAPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVTVSDSGVSGIKPSLNSNGSQSQSSSTASDVSVPTIKSRPAWDEDWGPTSKTPASSQSSTGNVLSAPVVLSGQSIAGNSIQTNSVVTTSLSSNQTVASCLPVDIEWPPQNSTSSTPIIADSGMQATTGSSSTSSLDGEDPFADWPPRPSGSLAGASGASNNGVVGPSKNKYGTGSSMTTPNSLNFQTNDSASWTLNNQNTSEPMIQNHGTSTFNSSSPGSGGINSLNSIGFQKQNQGIPSQLTYDADKKSTDLGSIFAPSKSDHNIAPRLAPPPTTAIGRGRGRGRGVSSTLRSTQNKSSSGQPPLMDLL 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5095353 5114432 + CmoCh01G009080.1 Cmo01g00908 374391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00908 931 Pfam Protein kinase domain 105 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00908 931 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 633 655 - -
Cmo01g00908 931 SUPERFAMILY ARM repeat 313 607 IPR016024 -
Cmo01g00908 931 Gene3D - 349 621 IPR011989 -
Cmo01g00908 931 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Cmo01g00908 931 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00908 931 MobiDBLite consensus disorder prediction 774 851 - -
Cmo01g00908 931 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 931 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 728 758 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 875 931 - -
Cmo01g00908 931 Gene3D Transferase(Phosphotransferase) domain 1 160 348 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 633 683 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 728 851 - -
Cmo01g00908 931 MobiDBLite consensus disorder prediction 909 925 - -
Cmo01g00908 931 CDD PK_SCY1_like 45 346 - -
Cmo01g00908 931 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 931 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00908 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1474.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00908 Cmo-Chr1:5095353 Cmo12g00950 Cmo-Chr12:8877493 7.34E-22 dispersed
Cmo01g00908 Cmo-Chr1:5095353 Cmo09g01267 Cmo-Chr9:11084919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74038 PF00069 Pkinase 8.30E-25 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00908 Cmo_Chr01 FPKM 0.814286 0.512599 0.585805 0.0 0.647196 0.906707 0.0 0.0 0.0 0.0