Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00920 ATGGACGCGATCGAGGAGTTGGGTGAGTTGTCCGAATCGATGCGCCAAGCGGCTGCTTTGCTTGCCGATGAAGATGTTGACGACAATTCTACCTCTGGCGGTTCTTCTCGTAGGGCTACGACTTTTCTCAACGTTGTTGCGTTGGGCAATGTTGGTGCCGGCAAATCTGCAGCCTTGAATAGTTTAATTGGGCATCCTGTTCTGCCAACTGGTGAAAATGGCGCTACACGAGCTCCAATTAGCATTGATTTGCAGAGGGATGGTTCTTTGAGTAGTAAATCAATTATTCTGCAGATTGATAATAAATCTCAGCAGGTTTCTGCAAGTGCTTTGCGACATTCTTTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGATTTTCATTTACAAAATTTCATTTCAGCGCCTCCACTGAAGTTGATTGATTTACCTGGGCTTGATCAACGGGCAATGGATGATTCTGTGGTTAGTGAATATGCTGAACACAATGATGCAATTTTGCTAGTTATTGTACCAGCTATTCAGGCTCCTGAAATTGCTTCATCTCGAGCCCTACGAACTGCGAAGGAATTTGATGCAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCCTCAGATATCCCATGGGTTGCTATAATTGGTCAATCGGTTTCGATAGTTACTGCACAGTCTGGATCTGTTGGCTCCGAGAATTCCATGGAGACTGCATGGAGAGCAGAGAGTGAAAGTTTAAAAACTATACTACCTGGTGCCCCTCAAAGTAAGCTAGGTAGGCTAGCTTTAGTTGATGCATTATCCCAACAGATCCGCAAACGAATGAAAGTCCGGCTTCCTAATCTTCTCTCCGGGTTACAAGGGAAGTCGCAAATAGTTCAGGATGAGTTAGTTAGGCTTGGTGAGCAAATGGTCAATGGTGTCGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTTGAGGGTAGTTTTCCAAATCGAATTAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATTGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTGCACAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAACTGCTGCCCTGGATGGGTTTAAAAATGAATCAAAAAAGATGGTTGTGGCGTTAGTTGATATGGAGCGAGCATTTGTCCCACCACAACACTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAACGCCGGGAAGAGGAAGTGAAGACTAAATCATCAAAAAAAGGGCAAGAGGCTGAACAAGCGGTGTCGAACAGGGCAAGTAGTCCTCAAACAAGTAGTCAGCAAGCTGGGGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAAGAAGATAAGGAAGTACAGGAGGGTTCGGGTTTGAAGACAGCAGGTGCTGATGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTGCAAAAACTAATGGATGGAGCAGGCGATGGTTTGTTTTGAATGCGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGACACTTTCGTGGTGTCATTACTTTAGAGGATTGTAATATTGAAGAAGCTACAGATGAGGAAGAGTCTCCACCTCCAAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCCGATTCTGGAAAAGGATCAAGTCTTGTGTTTAAGATTACCAGCAAGGTTCCATATAAAACCGTTTTAAAAGTTCATAGTGCTGTTGTCTTGAAGGCGGAGAGTGCTGCGGACAAGGTGGAATGGATAAACAAGATACGCAATGTCATTCAACCGTCCAAAGGAGGACAGATGAGAGGCGTATCCTCCGAAGGTGGTCTTACTATGCGGCAGAGTCTATCTGATGGTTCTCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAGGTTCGTGGTTATGTTGAAGCAGTGTTGAATAGTTTGGCTGCAAATGTTCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCGAAGGAAGACATGCTAAATCAATTATATAGCTCGATAAGTGCCCAAAGCTCTGCAAAGATTGAGGAGCTTCTTCAGGAGGATCATAATGTAAAACGGAGGCGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCCAAACTGACACGCCAGCTCAGCATTCATGATAATCAAGCATCTGCTGCTAGTTGGTCCGATGGTAGTCCAGAAAGCAGTCCCAAAACTAGCGGACCACCTGGAGGAGATGACTGGAGATCTGCGTTTGATGCTGCTTCTAATGGCCGGGCCGACTACAGAAGATCTTCTTCCAATGGTTACAGTAGATCTAGCGATCCCGCACAGAATGGTGACATAAACTCGGGTTCGAACTCTAGCAGCCGTCGCACTCCAAACCGGCTGCCACCAACACCTCCGCAGTCTTCTGGTTCCAGATACTTCTAG 2802 44.75 MDAIEELGELSESMRQAAALLADEDVDDNSTSGGSSRRATTFLNVVALGNVGAGKSAALNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTDFHLQNFISAPPLKLIDLPGLDQRAMDDSVVSEYAEHNDAILLVIVPAIQAPEIASSRALRTAKEFDADGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVAIIGQSVSIVTAQSGSVGSENSMETAWRAESESLKTILPGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGSFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIATAALDGFKNESKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTKSSKKGQEAEQAVSNRASSPQTSSQQAGGSLKSMKEKPSKEDKEVQEGSGLKTAGADGEITAGFLLKKSAKTNGWSRRWFVLNAKTGKLGYTKKQEERHFRGVITLEDCNIEEATDEEESPPPKSSKDKKANGPDSGKGSSLVFKITSKVPYKTVLKVHSAVVLKAESAADKVEWINKIRNVIQPSKGGQMRGVSSEGGLTMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSAKIEELLQEDHNVKRRRERYQKQSSLLSKLTRQLSIHDNQASAASWSDGSPESSPKTSGPPGGDDWRSAFDAASNGRADYRRSSSNGYSRSSDPAQNGDINSGSNSSSRRTPNRLPPTPPQSSGSRYF 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5183766 5196471 - CmoCh01G009200.1 Cmo01g00920 374403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00920 933 MobiDBLite consensus disorder prediction 518 583 - -
Cmo01g00920 933 Gene3D Dynamin, middle domain 347 552 - -
Cmo01g00920 933 SMART dynamin_3 11 255 IPR001401 GO:0003924|GO:0005525
Cmo01g00920 933 Pfam PH domain 592 712 IPR001849 -
Cmo01g00920 933 Pfam Dynamin central region 270 509 IPR000375 -
Cmo01g00920 933 PANTHER DYNAMIN 2 865 IPR022812 -
Cmo01g00920 933 PANTHER DYNAMIN-2A 2 865 - -
Cmo01g00920 933 MobiDBLite consensus disorder prediction 518 535 - -
Cmo01g00920 933 MobiDBLite consensus disorder prediction 883 917 - -
Cmo01g00920 933 ProSiteProfiles PH domain profile. 587 713 IPR001849 -
Cmo01g00920 933 SMART PH_update 588 715 IPR001849 -
Cmo01g00920 933 SMART GED_2 749 835 IPR003130 GO:0003924|GO:0005525
Cmo01g00920 933 MobiDBLite consensus disorder prediction 563 577 - -
Cmo01g00920 933 MobiDBLite consensus disorder prediction 844 862 - -
Cmo01g00920 933 ProSiteProfiles GED domain profile. 754 847 IPR020850 -
Cmo01g00920 933 Pfam Dynamin GTPase effector domain 752 834 IPR003130 GO:0003924|GO:0005525
Cmo01g00920 933 MobiDBLite consensus disorder prediction 640 669 - -
Cmo01g00920 933 Coils Coil 808 828 - -
Cmo01g00920 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 327 IPR027417 -
Cmo01g00920 933 MobiDBLite consensus disorder prediction 536 561 - -
Cmo01g00920 933 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 318 IPR030381 GO:0005525
Cmo01g00920 933 MobiDBLite consensus disorder prediction 646 663 - -
Cmo01g00920 933 Gene3D - 37 333 IPR027417 -
Cmo01g00920 933 SUPERFAMILY PH domain-like 589 713 - -
Cmo01g00920 933 Pfam Dynamin family 45 218 IPR045063 -
Cmo01g00920 933 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Cmo01g00920 933 PRINTS Dynamin signature 42 60 IPR022812 -
Cmo01g00920 933 PRINTS Dynamin signature 67 84 IPR022812 -
Cmo01g00920 933 PRINTS Dynamin signature 188 206 IPR022812 -
Cmo01g00920 933 PRINTS Dynamin signature 207 223 IPR022812 -
Cmo01g00920 933 MobiDBLite consensus disorder prediction 844 933 - -
Cmo01g00920 933 Gene3D Dynamin, middle domain 707 822 - -
Cmo01g00920 933 Gene3D - 587 706 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00920 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1622.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00920 Cmo09g01249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00920 Cmo-Chr1:5183766 Cmo15g00021 Cmo-Chr15:151070 0 dispersed
Cmo01g00920 Cmo-Chr1:5183766 Cmo09g01249 Cmo-Chr9:10754876 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00920 Cmo_Chr01 FPKM 1.373169 1.758052 5.297171 5.760434 5.681091 5.755991 6.179568 7.691448 6.561952 8.147549