Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00922 ATGGCTTACGACCATTTGGATCCATCAAAAGGCTATTCAGTTGCTTCTGGGCCAGGTCCAGCTTCAAAGCCTGCATCTGAAATGAAGATCTATCAGTTCTTTGTTTTCTGTATTCCAATTGTTGTCACTTTCATTATTCTCCTCCTTTTCTATCTCCTTTATCTTCGTCGCCGAAGGGCTGATTGGAGCTCCATCCGAATGCGAACCTCTACTACAGTCAACAACAATGACATCTCAACAGCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGTCATTCTTTGTCACTGACACACAATGTTCAGTCTGTTTAGGGGAATACAAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGAATGCATTGATCATTGGCTATCCAACCACACTACTTGCCCGCTCTGTCGCCACTCCGTCCTTTCTCCGTTACCTCAAACGCCACATGTTCAGATCGATATGGGACTCGAGTCATCGAATGAACAACAACACGAAGAAGCAACTCCCCCAGACAGTAATCAAGCTTGTCAACATACAACATCTCCGGTGTAA 594 43.77 MAYDHLDPSKGYSVASGPGPASKPASEMKIYQFFVFCIPIVVTFIILLLFYLLYLRRRRADWSSIRMRTSTTVNNNDISTAEVGLKKEFREMLPIIVYNESFFVTDTQCSVCLGEYKTEDKLQKIPSCGHVFHLECIDHWLSNHTTCPLCRHSVLSPLPQTPHVQIDMGLESSNEQQHEEATPPDSNQACQHTTSPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5226050 5227970 + CmoCh01G009220.1 Cmo01g00922 374405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00922 197 Pfam Ring finger domain 108 151 IPR001841 -
Cmo01g00922 197 MobiDBLite consensus disorder prediction 173 197 - -
Cmo01g00922 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 157 IPR013083 -
Cmo01g00922 197 SMART ring_2 109 150 IPR001841 -
Cmo01g00922 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cmo01g00922 197 CDD RING-H2_EL5_like 108 151 - -
Cmo01g00922 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 21 190 - -
Cmo01g00922 197 SUPERFAMILY RING/U-box 93 162 - -
Cmo01g00922 197 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 21 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00922 Cmo09g01208 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00922 Cmo-Chr1:5226050 Cmo15g01360 Cmo-Chr15:9301295 6.17E-26 dispersed
Cmo01g00922 Cmo-Chr1:5226050 Cmo09g01208 Cmo-Chr9:9214988 4.63E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00922 K19039 - csv:101219324 323.553