Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00923 ATGTTGAAGCTACAGCGATGGTTTTCCAGGAACCAGCTATTTGAACAAGTTGTGTGTAAGAAAGCTGGTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAGGACAAAAGTTTACTAATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAATACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTTCTTTTCATTGAACCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTGGCATGGAAAAGGGTTTTCAACCAAACAAGGTGAATCGTGAAGGATTGAAAGTTTATTTGATTACGTTACACTCTTCACAATCCATCTATGGATTCTCGGAGCTAGAATTGGTTACACAAATCCATTCATTTTGTTGGCTCCCTAGTATCACAAGTGATGGATGTGTTCGTACAATCTCTCTTTCGAATCAGAAACACTAG 852 41.55 MLKLQRWFSRNQLFEQVVCKKAGHVDHAFGSHPFSSGVGIPGQKFTNTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLNPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLGMEKGFQPNKVNREGLKVYLITLHSSQSIYGFSELELVTQIHSFCWLPSITSDGCVRTISLSNQKH 283
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 5228431 5246377 - CmoCh01G009230.1 Cmo01g00923 374406
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00923 283 Pfam Whirly transcription factor 63 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo01g00923 283 SUPERFAMILY ssDNA-binding transcriptional regulator domain 54 215 IPR009044 GO:0003677|GO:0006355
Cmo01g00923 283 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 3 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo01g00923 283 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 3 219 - -
Cmo01g00923 283 Gene3D Transcriptional Coactivator Pc4; Chain A 50 222 IPR009044 GO:0003677|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00923 Cmo-Chr1:5228431 Cmo12g00648 Cmo-Chr12:4168500 3.98E-47 dispersed
Cmo01g00923 Cmo-Chr1:5228431 Cmo05g00952 Cmo-Chr5:7664738 1.03E-47 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9073 PF08536 Whirly 1.50E-51 CL0609 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00923 - - csv:101219085 355.525