Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g00923 | ATGTTGAAGCTACAGCGATGGTTTTCCAGGAACCAGCTATTTGAACAAGTTGTGTGTAAGAAAGCTGGTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAGGACAAAAGTTTACTAATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAATACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTTCTTTTCATTGAACCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACACGCAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTGGCATGGAAAAGGGTTTTCAACCAAACAAGGTGAATCGTGAAGGATTGAAAGTTTATTTGATTACGTTACACTCTTCACAATCCATCTATGGATTCTCGGAGCTAGAATTGGTTACACAAATCCATTCATTTTGTTGGCTCCCTAGTATCACAAGTGATGGATGTGTTCGTACAATCTCTCTTTCGAATCAGAAACACTAG | 852 | 41.55 | MLKLQRWFSRNQLFEQVVCKKAGHVDHAFGSHPFSSGVGIPGQKFTNTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLNPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLGMEKGFQPNKVNREGLKVYLITLHSSQSIYGFSELELVTQIHSFCWLPSITSDGCVRTISLSNQKH | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 5228431 | 5246377 | - | CmoCh01G009230.1 | Cmo01g00923 | 374406 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g00923 | 283 | Pfam | Whirly transcription factor | 63 | 197 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cmo01g00923 | 283 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 54 | 215 | IPR009044 | GO:0003677|GO:0006355 | |
| Cmo01g00923 | 283 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 3 | 219 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cmo01g00923 | 283 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 3 | 219 | - | - | |
| Cmo01g00923 | 283 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 50 | 222 | IPR009044 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g00923 | Cmo-Chr1:5228431 | Cmo12g00648 | Cmo-Chr12:4168500 | 3.98E-47 | dispersed | |
| Cmo01g00923 | Cmo-Chr1:5228431 | Cmo05g00952 | Cmo-Chr5:7664738 | 1.03E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9073 | PF08536 | Whirly | 1.50E-51 | CL0609 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g00923 | - | - | csv:101219085 | 355.525 |