Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00934 ATGTCTGGAAGTGGTGGAACTGCGATTTTCAAATGGAAGAAATTGAGGGCAATAAGGCTGCTCTGCTTCTCCAATCACAGTCACCGTTTGACCCAGATTTGCCCCATTTCGACCCATCTCAATTATCTTTATGCTTCGAGTTATCGCCGCCGGGAATCGTTTATCGGCGTTCAGGAGCGTTATAAATGGGACAACGGCGGGTCTGGTTCTGATGATTTCCATTCACAGTCCTACAACACAAGTACTCCAATCCGTAAGATTCGGGCCGAGGCTAATTGTCCACGTTGCTCTAAGCATATGGATATTCTCTTCTCCAACCGTCATTTTCCAACCCTTAATCCCCCTTCTTCTCTTCCATCTTCTTCCGATGCTCCTCCGAACCGAAAAGAAGCTTACGAAGCTGTTAATTTGTGTCCCAATTGCAAGACCGCTTACTATTTCCGCCCTTACAAGATCGCTCCTCTACGGGGCAGTTTCATCGAGATCGGCAATCTGAATTCCAAACCGAAGAATTCCTTAGAAAGAAGAATTACTACCAAAGATGGTAAAGGTAATGCCATCGCCGGTTCTCCAGATGAAAATTATGTGAATAGTAGGTTGAGAGTCTCGTTTTTCGAAACTGCAAGATTGTATGGTGGAGAACCGCCTGAGAATTGGCCTCCTGGACCGCCTCCCGTTAATGGGCTGGCGGTGCATTCTCCTCCAGGTCCGCCATATGCGCCTGGTGTGAACTTCATTCGTGCTACAGGTCCTGGTGGAAGCATCTCGGGTTCGGGTGGAAATGGCGCTGGTGATGGGAAGAAGAGTGAGTGGGGAGGATCGAATTTGGGGAAGGATCTACCCACTCCTAAAGAGATTTGCAAGGGCTTGGACAAATTTGTTATTGGCCAAGAAAAAGCCAAGAAGGTACTTTCTGTGGCAGTACATAACCATTACAAACGAATATATCATGCTTCCTTGAAAAAATGCGCGCCAGGAACTGAATCAGAAACCCAAGATATGATAGATGATGATGATAACGTGGAGCTTGAAAAGAGCAATGTTCTTTTGATGGGTCCAACAGGCTCTGGGAAGACGTTACTTGCGAAGACTTTAGCTCGATTCGTCAATGTGCCATTTGTCATTGCTGATGCTACAACTTTAACACAGGCTGGTTATGTTGGAGAAGACGTTGAATCAATTTTGTACAAGCTACTTGCTGCAGCAGAATTCAATGTACAAGCAGCTCAGCAAGGGATGATTTACATTGATGAAGTTGACAAGATAACAAAGAAGGCTGAGAGTCTAAATATTAGCAGAGATGTTTCTGGTGAGGGCGTTCAACAGGCATTATTGAAGATGCTAGAAGGAACCATAGTAAATGTTCCTGAGAAGGGGGCAAGGAAGCATCCTCGGGGTGATAACATTCAGATAGATACAAAAGATATTTTGTTTATATGTGGTGGAGCGTTCGTAGATCTAGAAAAGACAATCTCTGATAGACGGCAAGACTCTTCTATTGGTTTTGGAGCACCTGTTCGTGCTAACATGAGAATGGGCGGGGTAACAAGTGCTGCAGTTACATCATCATTATTGGAAACGGTTGAGAGTTCTGATCTTATAGCATATGGCCTCATACCCGAGTTTATTGGGCGTTTTCCAATTCTTGTTAGCTTATCAGCCTTAACTGAAGACCAGCTTGTCCAGGTCCTCACTGAACCGAAGAACGCTCTTGGTAAGCAGTACAAGAAGTTGTTTAGCATGAATAAAGTGAAACTGCATTACACAGAGAAAGCGCTGAGACGGATTGCCCAGAAAGCAATAAACAAGAATACTGGTGCCAGAGGATTAAGAGCCATACTTGAAACCATTCTTACTGAAGCCATGTATGAGATTCCAGATGTTAAGACTGGAGACGATAGAGTAGATGCCGTTGTTGTCGATGAAGAGTCTGTTGGCTCGGTAAATTTGGCTAGTTATGGAGGGAAAATTCTTCGTGGGGATGGAGCGTTGGAGCGCTACCTGGCTGAGACCAAGTTGAAAGAATCACAGGATAATTTGGAGGTGATTGAGTTGCCGGAAGGTGAGACAGAGCTGCCATCAAGAGCCGTGAGTATATAG 2100 44.95 MSGSGGTAIFKWKKLRAIRLLCFSNHSHRLTQICPISTHLNYLYASSYRRRESFIGVQERYKWDNGGSGSDDFHSQSYNTSTPIRKIRAEANCPRCSKHMDILFSNRHFPTLNPPSSLPSSSDAPPNRKEAYEAVNLCPNCKTAYYFRPYKIAPLRGSFIEIGNLNSKPKNSLERRITTKDGKGNAIAGSPDENYVNSRLRVSFFETARLYGGEPPENWPPGPPPVNGLAVHSPPGPPYAPGVNFIRATGPGGSISGSGGNGAGDGKKSEWGGSNLGKDLPTPKEICKGLDKFVIGQEKAKKVLSVAVHNHYKRIYHASLKKCAPGTESETQDMIDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGMIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRMGGVTSAAVTSSLLETVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLFSMNKVKLHYTEKALRRIAQKAINKNTGARGLRAILETILTEAMYEIPDVKTGDDRVDAVVVDEESVGSVNLASYGGKILRGDGALERYLAETKLKESQDNLEVIELPEGETELPSRAVSI 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5382731 5392535 + CmoCh01G009340.1 Cmo01g00934 374417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00934 699 MobiDBLite consensus disorder prediction 241 278 - -
Cmo01g00934 699 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 275 645 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cmo01g00934 699 SMART AAA_5 344 506 IPR003593 -
Cmo01g00934 699 Pfam C-terminal, D2-small domain, of ClpB protein 555 625 IPR019489 -
Cmo01g00934 699 SMART ClpB_D2_small_2 555 645 IPR019489 -
Cmo01g00934 699 Pfam AAA domain (Cdc48 subfamily) 344 548 IPR003959 GO:0005524|GO:0016887
Cmo01g00934 699 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 42 696 - -
Cmo01g00934 699 Gene3D - 554 654 - -
Cmo01g00934 699 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 42 696 - -
Cmo01g00934 699 Gene3D - 274 553 IPR027417 -
Cmo01g00934 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 640 IPR027417 -
Cmo01g00934 699 CDD AAA 345 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00934 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101217900 1190.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00934 Cmo-Chr1:5382731 Cmo04g01998 Cmo-Chr4:10547298 0 dispersed
Cmo01g00934 Cmo-Chr1:5382731 Cmo09g01200 Cmo-Chr9:8956976 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00934 Cmo_Chr01 FPKM 2.944711 3.234155 3.573536 2.972141 8.487781 9.167946 8.479198 6.237774 5.613088 6.052254