Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00935 ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCCCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCAGCTTCCTCTGCTTCTAGCCCGGTCACCTCCAAGATCGTGGCGCTTTTCGGGAAGAAGCCAGCCCCCGCACCCAAGCCCAAGCCCTCCGCTGTCTCTCCAGCCAATGACGAGCTCGCCAAGTGGTATGGTCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTGTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGCTGCAGAGGTTGTTCTTGTCGGTGGTGCCGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCAGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA 876 55.59 MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5416812 5418640 + CmoCh01G009350.1 Cmo01g00935 374418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00935 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Cmo01g00935 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Cmo01g00935 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 291 IPR001344 GO:0009765|GO:0016020
Cmo01g00935 291 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 291 - -
Cmo01g00935 291 SUPERFAMILY Chlorophyll a-b binding protein 73 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00935 Cmo-Chr1:5416812 Cmo20g00287 Cmo-Chr20:1389168 5.51E-68 dispersed
Cmo01g00935 Cmo-Chr1:5416812 Cmo09g01192 Cmo-Chr9:8748631 3.47E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00935 K08916 - csv:101218137 514.612