Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00937 ATGTTTGCTGCAACGCTGGGAACCGTCTCAGCTCATTCCTTTCTCTCTCAGTTCGGCTCCATCGATGCTTCTCACGCTCATTCAAGCTCCGCCTCCACCTCCCTTGTAATCCACAGGCCCCTCTTTAAACAACCTTCCAACTTCCCTGCCGGAGCTTCCCTCTCTCAGTCGAGTTTCGGAGTTCTCGATACTTCACCTGCTTCGCCGGAATCAGTTCGACGCGCTCAGGTGCATGTGAATGTGCAGCAAATAATTCAGAAAAAGAGGAACCTTTTTGTCAGATACAGCAACAGGGCTGGTAGGTTTTTTGGTCTCAGTAAGAATCCATCTGCTAGTGCAGCAGTGGTTACTGCAACGTCCTCAGCATCTGTGGGCGTTGGGGCTGCTCTGGAGGTGCAAGAAATACGGGAGAGATCCAACAAGTGGCAATGGAACCAGTACTCCATAAACTATTTCGTTTCTCATTATCAACCTTCTCAACAGCAACATCAATCAAGTGTAGATCCTCCTGTCGTCCTTTTAGTTCATGGATTTGGAGCTTCTATTCCTCATTGGCGCAGGAATATTAGCGCATTGTCTCAATACTCAACTGTCTATGCCATCGACCTTCTTGGCTTTGGTGCATCTGATAAGCCTGCCGGCTTTGCATATACCATGGAAACATGGGCTGATTTGATATTGGATTTTGTGAAAGACATCATTAAGAGACCAACTGTGCTAGTGGGTAACTCAGTGGGAAGCCTTGCTTGTGTGATTGCTGCTTCAGATTCTAGTCGCAATCTAGTTCGAGGACTTGTGCTCTTAAACTGTGCTGGTGGCATGAACAATAAAGCAATTGTTGACGATTGGAGGATCAAACTGTTATTACCTTTGCTTTGGCTGGTCGATTTCTTATTGAATCAACGGAGAATTGCTTCAGCTCTGTTTGAGCGTGTCAAGAAGAGAGATAGCTTGAGGAACATTTTGTCGTCCGTATATGGAAACAAGGAAAATGTGGATGAAGATCTGATAGATATAATATTAGAACCAGCCAATGACGAAGGGGCACTTGATGCATTCGTTTCAATCGTAACGGGGCCACCAGGGCCGAGCCCAGTGCAACTAATGCCAAAAATTTCCGTGCCTGTTTTGATTTTATGGGGAGATGAAGATCCATTCACGCCACTTGATGGTCCTGTTGGGAAGTACTTCTCCAAGTTATCTATGGAAGCTCCAAATGTCAGTCTTTGTGTGTTGGAAGGGGTAGGACATTGCCCTCATGATGACAGGCCTGAATTAGTGCATGAAAAGCTCCTTCCATGGCTGGCTCAGCTTCATGCTTTGTAA 1326 46.08 MFAATLGTVSAHSFLSQFGSIDASHAHSSSASTSLVIHRPLFKQPSNFPAGASLSQSSFGVLDTSPASPESVRRAQVHVNVQQIIQKKRNLFVRYSNRAGRFFGLSKNPSASAAVVTATSSASVGVGAALEVQEIRERSNKWQWNQYSINYFVSHYQPSQQQHQSSVDPPVVLLVHGFGASIPHWRRNISALSQYSTVYAIDLLGFGASDKPAGFAYTMETWADLILDFVKDIIKRPTVLVGNSVGSLACVIAASDSSRNLVRGLVLLNCAGGMNNKAIVDDWRIKLLLPLLWLVDFLLNQRRIASALFERVKKRDSLRNILSSVYGNKENVDEDLIDIILEPANDEGALDAFVSIVTGPPGPSPVQLMPKISVPVLILWGDEDPFTPLDGPVGKYFSKLSMEAPNVSLCVLEGVGHCPHDDRPELVHEKLLPWLAQLHAL 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5426737 5432200 + CmoCh01G009370.1 Cmo01g00937 374420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00937 441 Gene3D alpha/beta hydrolase 129 439 IPR029058 -
Cmo01g00937 441 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 91 439 - -
Cmo01g00937 441 SUPERFAMILY alpha/beta-Hydrolases 138 435 IPR029058 -
Cmo01g00937 441 Pfam Alpha/beta hydrolase family 172 428 IPR000073 -
Cmo01g00937 441 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 91 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00937 - - - cmax:111471988 802.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00937 Cmo-Chr1:5426737 Cmo04g00798 Cmo-Chr4:3997879 8.40E-54 dispersed
Cmo01g00937 Cmo-Chr1:5426737 Cmo16g00664 Cmo-Chr16:3305617 9.14E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1795 . Blo12g00803 . Bda03g00369 . Bpe04g00332 Bma04g00347 . . . Cma01g00893 . Car01g00814 . . . . . . . . . . . Cla08g00207 . . . . . Cre08g0181 . . . . . . . . . . . . . . . . . Cmo01g00937 . . . . . . Cpe02g00973 . . . . . . . . . . . . . . Lsi08g00193 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005437 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00937 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 1.085349 1.441106 1.538095 0.0 0.0 0.0