Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00943 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTCGTCCTAATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTGAGCGGGCAAATTTGTCAGATCTGTGGGGATGAGGTAGAAGTCACCGTTGATGGAGAGCCATTTGTTGCGTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACTAGATACAAGCGTCTCAAAGGTGAACGAACGATCGAACAAACGAATATAAGCAGTCCTCGGGTTGAAGGCGATGAAGAAGAAGATGATATTGATGATCTTGAGAATGAGTTTGACATTGCAAACAAGGATCCCAACAGTTTATCTGAGGCAATGCTCTATCCTCACCTCGCTGTCGGTCGTGGTTCTCACGCTCATGGTTATGGAAATACGGGTTCCGACCTCGACTCATCCGTTCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGTGAATCTCTTCTTCTTTACAGTTATACCATCAACCATTTTCGTTGATGCTGGAATTTCCTCCGATAAGCACGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCAGTGCCATTCACTGATTCTCCCATGTCCGGTAAGCTCGGTGAATTCTTATGCGTAATGAAGTCTGTTAGGAGTGAATCTAGCATCTATCATTGTTTCTTCTGGGTATGTTTATGTTTACTTCGTACCAATCCAAGGCCTATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACTGTTGCGTGGAAGGAACGAATGGAGGACTGGCGGAAGAAACAAAATGAAAGGCTTCAAGTGATTAAGCATGAAGGTGGAGGTGGAAAAGGCGACGACGAGTTTGACGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCACTTTCTCGAAAACTGCCTATCTCCTCGAGCAAGATCAATCCATACAGAATGATAATTGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATCCTCCACCCTGTCTATGAGGCGTATGGTCTGTGGTTAACATCAGTAATATGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTTCCGAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTACGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCGAACACCGTCCTGTCTATCCTTGCTGTTGATTATCCGGTAGACAAGGTTTCATGCTACGTTTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGAGCCCCAGAGTGGTATTTTGCCCTGAAGGTTGACTATCTGAAAAACAAAGTTGATCCGACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCGGAAGATGGATGGACAATGCAGGATGGAACACCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTTGGTCAAAACGGGGTTCGTGACTTGGAGGGAAATGAATTACCTCGTCTTGTATATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTGCGTGTCTCGGCAATCATCTCCAACGCTCCATACATTTTGAATGTCGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCTGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCATGATCGATACTCAAATCGCAATGTTGTGTTCTTCGATATCAACATGAAAGGATTAGATGGCATTCAGGGGCCGATTTATGTCGGAACTGGGTGTGTCTTCAGGAGGCAAGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAGCACCAAGAAGGACTTGTAATTGTCTGCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAACCAAAGACCAGTGATAAAAAGAAGTTAAAGACCAAAGATGCGTCGAAGCAGATTCACGCTCTCGAAAATATCGAGGAAGGTATTGAAGGAATAGATAATGAGAAATCATCACTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACCCTTATGGAAGACGGTGGCGTGCCTGGAGGCGGGACATCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATCTATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGTCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGATCTGTCGAAATTCTTTTAAGCAGGCACTGTCCAATATGGTATGGATATGGATGTGGTTTGAAATGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACATCGATTCCATTGATTGCTTATTGTACCCTGCCCGCTGTCTGTCTGCTTACCGGGCAATTTATCGTCCCTGAGCTAAGCAACTATGCGAGTATCATTTTCATGGCCCTTTTCATATCTATAGCAGCAACTGGTATACTAGAAATGCAGTGGGGAGGTGTTGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACAGTCACGTCGAAGGGAGGAGACGATGGGGAGTTTTCGGAGCTTTACCTCTTCAAATGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATCATCGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATCGGTAAGCTTTTCTTTGCATTCTGGGTTATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTGCCAACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATCTTGTCACTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTATTGGAAGTCTGTGGGTTAAACTGTGACGACTAA 3441 44.61 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEVEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGERTIEQTNISSPRVEGDEEEDDIDDLENEFDIANKDPNSLSEAMLYPHLAVGRGSHAHGYGNTGSDLDSSVPTDIPLLTYGQEVNLFFFTVIPSTIFVDAGISSDKHALIIPPFISRGKKVHPVPFTDSPMSGKLGEFLCVMKSVRSESSIYHCFFWVCLCLLRTNPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVYEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKNKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKPKTSDKKKLKTKDASKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5607120 5613221 - CmoCh01G009430.1 Cmo01g00943 374426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00943 1146 PANTHER CELLULOSE SYNTHASE 1 191 - -
Cmo01g00943 1146 PANTHER CELLULOSE SYNTHASE 252 1144 - -
Cmo01g00943 1146 Pfam Zinc-binding RING-finger 30 115 IPR027934 -
Cmo01g00943 1146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 122 IPR013083 -
Cmo01g00943 1146 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 191 - -
Cmo01g00943 1146 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 252 1144 - -
Cmo01g00943 1146 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo01g00943 1146 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 565 711 IPR029044 -
Cmo01g00943 1146 SUPERFAMILY RING/U-box 28 117 - -
Cmo01g00943 1146 SUPERFAMILY Nucleotide-diphospho-sugar transferases 433 938 IPR029044 -
Cmo01g00943 1146 Coils Coil 109 129 - -
Cmo01g00943 1146 Pfam Cellulose synthase 419 1133 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo01g00943 1146 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00943 Cmo-Chr1:5607120 Cmo03g01063 Cmo-Chr3:7914116 0 dispersed
Cmo01g00943 Cmo-Chr1:5607120 Cmo09g01185 Cmo-Chr9:8679508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00943 K10999 - csv:101214061 2076.6