Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00952 ATGGACGGCCCCCCTGCGGGCGATATCTGTTCGATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAACTGCTCGCACTGGTTCTGCGGAAGGTGCATAATGCTTGTTTGGGATCATGGATCACCACTGCAGCCATGTAAATGCCCCTTATGTCGCCGACAGATCACTTTATTGGTTCCTTCTGAGGCTTCAGCAACGCAGCAAAGTGACCCTGAGGTTGCTCGTGTTCTTAACAATATAAGGAATTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAATCAGCGACTGCAGGACCTTCCTTTTCTCTTACGGAGATTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACACTGCAATGTTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCCGAAGCATTACTAGGGTTATTTGGACTGATGGATGATGCCTTTATACTGCTCATCTGCTTCCTTTATGTTGCTGCTTTATACCGATCGGTACTCCATAATCGCCATGGAGGAACTTGA 558 46.77 MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNRHGGT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5884529 5894965 - CmoCh01G009520.1 Cmo01g00952 374435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00952 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Cmo01g00952 185 SMART ring_2 10 52 IPR001841 -
Cmo01g00952 185 PANTHER UNCHARACTERIZED 2 184 IPR038896 GO:0061630
Cmo01g00952 185 PANTHER BNAC07G13660D PROTEIN 2 184 - -
Cmo01g00952 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Cmo01g00952 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Cmo01g00952 185 SUPERFAMILY RING/U-box 8 59 - -
Cmo01g00952 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00952 K15707 - cmo:103501307 329.331