Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00954 ATGGCCGCCCTTCACCAAACCGCCGCTTCTCTCCAGGCCAAGCTCCTTCCAACCATTCGAATCTCCCGAACCACACCTGCAAACCTCTCCTTCTCCGCTACTTTTCCTTCTCGCCGACTCCGCCTCGGCCACCTCCGCTCTCACGCCGCCACTAAAATGTCCACCAGTGCCGCCGGGAGCTACGCTGCTGCGCTCGCGGAAGTCGCCGCCTCAAACGACACGCTCGAGGTCACAAGCGCGGATGTGGAGAAAATCGAGAGCGTGTTCGCGGATCCGCAGTTGTTCGATTTCTTCGCGAATCCGACGATTAAGGTCGAGAGGAAACTGGAGGTGGTTGATGAGATCGCTTCGTCGTTGTCTCTACAGCCGCATACGGAAAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAAACAGTGTACAACAAATTGACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTGGAATTGGAGGAGCAGCATTTGACGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATTGATCCAAGTCTTGTGGCTGGATTCACTGTGAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAGCAGCTTGAGGAAATCGCTACTCAGCTTGATCTCGGCAACATTCAACTGACGGTATAA 723 53.25 MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5912764 5913486 - CmoCh01G009540.1 Cmo01g00954 374437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00954 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cmo01g00954 240 PANTHER BNACNNG66500D PROTEIN 26 239 - -
Cmo01g00954 240 PANTHER ATP SYNTHASE DELTA CHAIN 26 239 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 Gene3D - 57 150 IPR026015 -
Cmo01g00954 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Cmo01g00954 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 55 157 IPR026015 -
Cmo01g00954 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00954 Cmo09g01238 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00954 Cmo-Chr1:5912764 Cmo09g01238 Cmo-Chr9:10615482 7.32E-136 dispersed
Cmo01g00954 Cmo-Chr1:5912764 Cmo14g01022 Cmo-Chr14:5566786 2.73E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00954 K02113 - csv:101211740 365.155