Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00971 ATGGATCCGGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCGTTTCCTAATATTGATGCCCAGCAACCTGAACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGACCAGCCCTTTCAAGAATATGAAGAACAGACTGAATCGAAGGCATCCTTAACGCGTAGCTCGAATCAACAAATTGGAATCCTGAATAAAGATAGTGATCAGATGAATGCAGCAATTCTAGGCAGTAAGGTTCAAGATTGGGACCCAAGAGCGATGCTAAGTAATCTGTCTTTTCTTGAGCAGAAGGTTCATCAGCTTCAGGAACTTGTGCATTTGATCATTGGCCGGAGGAGCCAAGTGTTGGGGAGGCCAGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCTGATCTAACTTCAATTATTGTTCAGTTAATCTCAACAGCAGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTTTCTGCAGCTGTTCCTCTGGTCGGGCAGCTGGAGCCGCCACTCGACAGGGTTCTTTTTGCATCTGAATCTGGGACGAATAATGGCGTTGTTCAGTCGCAACATGGTGATGGAACTAAACTTCCCGAGGTTCCAACCCAAGTAGACGAGAGTAGCAAGTATGGGAAGGAACGGATTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGACGAAAGCGAGAACCTCCCCCCAGGTTCATATGAAATATTGCAACTAGAAAAAGAAGAGATCCTAGCACCTCACACTCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCATATGAGGGGTCACGGTGACGAATACAAAACCGCTGCTGCTCTTGCAAAGCCGAACAAAGAAGCGAGTTATGAGACGATGCTGATTAAGAGGTACTCGTGCCCCTTCACCGGGTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTAAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAGTTCTCAGTAATTGCTGATCTCAAAACACACGAAAAGCACTGTGGGAAAGATAAGTGGCTGTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTGTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGAAGAATCCAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTACGAAACAGCGAATAAGCTCGGGAGTATAAATTTCAGTTTCGGGTCGATTGCTTCGGGAGGAAGTTCAGTTGAAACCATAGCAGCAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTACATATTTCTCGCCATTGAACTTCGATCCGTGTAATTTTGGTGGCTATCACGAGTTTCCTCGACCACCATTCGAGAACGCAGAGAATGCGTTTTCGTTCCTTATCCCGACATCTAGCAATTACAACCAAAAATCTGGCGCAGAGTCAAGCTGTAATAACCTTGAATGA 1542 44.55 MDPEDSLCSSEVWTKSSSFPNIDAQQPEQKWVDTSILDYAMDQPFQEYEEQTESKASLTRSSNQQIGILNKDSDQMNAAILGSKVQDWDPRAMLSNLSFLEQKVHQLQELVHLIIGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNFSAAVPLVGQLEPPLDRVLFASESGTNNGVVQSQHGDGTKLPEVPTQVDESSKYGKERIEEHESKDEEDADESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEASYETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEESKGTAMSCDRGERYETANKLGSINFSFGSIASGGSSVETIAAADAKGGVDDPLTYFSPLNFDPCNFGGYHEFPRPPFENAENAFSFLIPTSSNYNQKSGAESSCNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6226646 6228187 + CmoCh01G009710.1 Cmo01g00971 374454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00971 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 IPR044300 GO:0010044|GO:0010447
Cmo01g00971 513 MobiDBLite consensus disorder prediction 188 239 - -
Cmo01g00971 513 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Cmo01g00971 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 496 - -
Cmo01g00971 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Cmo01g00971 513 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Cmo01g00971 513 Gene3D Classic Zinc Finger 242 311 - -
Cmo01g00971 513 SMART c2h2final6 307 340 IPR013087 -
Cmo01g00971 513 SMART c2h2final6 258 280 IPR013087 -
Cmo01g00971 513 SMART c2h2final6 345 367 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00971 Cmo-Chr1:6226646 Cmo07g00551 Cmo-Chr7:2481107 2.94E-78 dispersed
Cmo13g00264 Cmo-Chr13:2191858 Cmo01g00971 Cmo-Chr1:6226646 1.05E-76 transposed
Cmo01g00971 Cmo-Chr1:6226646 Cmo09g01158 Cmo-Chr9:7299396 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9076 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00971 - - cmax:111471438 997.653