Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00980 ATGATAAAGGGAATGTTTGTGTTTGGGAGCTCTCTAGTTGACAATGGCAACAATAACTTTTTAGAGAACTCAAGGGCCAAAGCTGACTTTTTACCTTACGGAATGGATTTTTCTCTCGGTCCGTTGGGACGATTTACGAACGGCAAGAATGTTATCGACCTTCTCGGAGATTATTTTCACCTTCCTTCTCCCATTCCTCCGTTCACTGATCCTTCAACGAAGGGGAAGAAGATTGTTCATGGCGTCAACTATGCTTCTGGTGGTTCTGGTATTCTAGATAACACCGGTGCCATCACGGGAAATGTAATAAGTTTGAACAGACAAATCAAAAACTTTGAAACCGTGACGTTGCCTGAATTGAGAAGAGGTATGAGGACGAGGGTATCGTTAGACGAGTATTTGTTTGTGGTTGGATCGGGAGGGAACGATTACTCATTCAACTACTTTTTGAGTAACCTCCACTCGGAACTCAGCCTCGACTCGTTCACAGCCAACCTCACAGCCACATTGTCTCAACAACTCAAAAAGCTGTATGGTTTGGGAGCAAGGAAAATAGTGTTGATATCAGTGAACCCATTAGGGTGCAGTCCAATGGTGAGAGCAAATAACAAAGGACAATGCCTTGATATACTAAACCAAGCTGCTCAAATGTTCAATCTCAACTTGAAGACATTGGTGGATGACCTAAAACCACAAATGCCACTCTCCAATCTCGTCTTCCTTAATTCGTACAAGATTATCGATGATATTATCTCTCACCATATTTCTAAAGGGTTTATGGAGGCAGCTGTGCCCTGCTGTGAAGTGCCATCTCTGAGTGAAGGTGGGAATGGAGTTTTGTGCAAAAATGGAGGCCAAACTTGTCCAAATAGAACCAACCATGTCTTCTTCGACGGGTTACATCCAACCGAAGCTGTCAACGTCCTCATAGCATCTAAGGCTTATGCTTCTCAACTTCAAACCGAAGTTTATCCCACTAATCTTTTTCACCTCGTCAATCTATAG 1005 42.99 MIKGMFVFGSSLVDNGNNNFLENSRAKADFLPYGMDFSLGPLGRFTNGKNVIDLLGDYFHLPSPIPPFTDPSTKGKKIVHGVNYASGGSGILDNTGAITGNVISLNRQIKNFETVTLPELRRGMRTRVSLDEYLFVVGSGGNDYSFNYFLSNLHSELSLDSFTANLTATLSQQLKKLYGLGARKIVLISVNPLGCSPMVRANNKGQCLDILNQAAQMFNLNLKTLVDDLKPQMPLSNLVFLNSYKIIDDIISHHISKGFMEAAVPCCEVPSLSEGGNGVLCKNGGQTCPNRTNHVFFDGLHPTEAVNVLIASKAYASQLQTEVYPTNLFHLVNL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6473143 6475179 + CmoCh01G009800.1 Cmo01g00980 374463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00980 334 Pfam GDSL-like Lipase/Acylhydrolase 6 313 IPR001087 GO:0016788
Cmo01g00980 334 Gene3D SGNH hydrolase 1 321 IPR036514 -
Cmo01g00980 334 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 1 333 - -
Cmo01g00980 334 CDD SGNH_plant_lipase_like 5 315 IPR035669 -
Cmo01g00980 334 PANTHER OS06G0560700 PROTEIN 1 333 - -
Cmo01g00980 334 SUPERFAMILY SGNH hydrolase 78 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00980 - - - csv:101214473 529.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00980 Cmo09g01166 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00980 Cmo-Chr1:6473143 Cmo13g00869 Cmo-Chr13:7920091 2.08E-71 dispersed
Cmo01g00980 Cmo-Chr1:6473143 Cmo09g01166 Cmo-Chr9:7592037 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1291 Blo01g01753 Blo12g00766 . Bda03g00416 . Bpe04g00382 Bma04g00393 Bma01g02536 . . Cma01g00940 Cma09g01164 . . . Cpe06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00848 . . . . . Sed10g1778 Cmo01g00980 Cmo09g01166 . . . Car09g01041 . . Bhi09g01567 Tan01g2976 Cmetu01g1498 . . . . Cla09g00962 Cam09g1014 Cec09g1017 Cco09g1029 . . Cre09g0977 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007522 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00980 Cmo_Chr01 FPKM 26.132587 27.791132 39.068005 40.224129 2.56754 2.427029 3.796471 0.152095 0.0 0.169358