Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00984 ATGGCAGTCAGCTTTCTTGATAGGAAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGATGCAGAACTTGAAAGACGAAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTCAAGAAAGTAGTGGGAGCTGGAAAGGAGCAAGCTGGAACTGCTAGTTCTAATGGGATGCGTCGAGAATTGATGAGATTACCAAATCCGCACGAAACAGACAGATCAAACTTATATACAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCTGATCGACAGCTGCTTCTCATAAAGCGGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCAAATTGCAGGATAAAATTATTGACGATCTTGGAAATGAAATGGACAGTACATCAAATCGCCTCGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATCTTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 600 44.67 MAVSFLDRKVDELDKAIAVAARDPSWYGIDDAELERRRRWTSTARTQVGNVKKVVGAGKEQAGTASSNGMRRELMRLPNPHETDRSNLYTAHQANDDFITSESDRQLLLIKRQDEELDELSASVERIGGVGLTIHEELKLQDKIIDDLGNEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLVALFIILFVLVFLT 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6509852 6511418 - CmoCh01G009840.1 Cmo01g00984 374467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00984 199 Gene3D - 2 57 - -
Cmo01g00984 199 CDD SNARE_Qc 110 167 - -
Cmo01g00984 199 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 107 169 IPR000727 -
Cmo01g00984 199 PANTHER SYNTAXIN-61 6 198 - -
Cmo01g00984 199 SMART tSNARE_6 102 169 IPR000727 -
Cmo01g00984 199 Pfam SNARE domain 144 195 IPR000727 -
Cmo01g00984 199 Gene3D - 114 178 - -
Cmo01g00984 199 PANTHER SYNTAXIN 6 198 IPR045242 -
Cmo01g00984 199 SUPERFAMILY t-snare proteins 4 53 IPR010989 GO:0016020|GO:0016192
Cmo01g00984 199 Coils Coil 145 165 - -
Cmo01g00984 199 Pfam Syntaxin 6, N-terminal 6 52 IPR015260 GO:0016020|GO:0048193
Cmo01g00984 199 SUPERFAMILY SNARE fusion complex 106 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00984 Cmo-Chr1:6509852 Cmo17g00043 Cmo-Chr17:213771 1.15E-78 dispersed
Cmo01g00984 Cmo-Chr1:6509852 Cmo09g00974 Cmo-Chr9:5158698 8.11E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00984 K08500 - csv:101212527 293.123