Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00995 ATGGGAAGTGGGAGGAAGAAGAAGCGTACCGAGTGTTCAGAGCCTTCTTCATCGTCACCGTCCTCTTCAGATAACTCGGACAGCTCTTCTATGCGGTCGCGCCGCCATCGCCGCAGTGGCAGTTCAAGGAGGGAGAAGGACAAGAAGCGAGAGTCGAGGATTAGAGATAGGGAGAGGAAGAGAAAAGATAGGAATAGGGAGAGAGATAGAAAGATGAGAAAGAAGAAATTGAGAAGGGAGGCCAAGAGAAAGAGGGATGATTATGGATCTGAAAGTGATGCTGAGTCCTCACGTTCAGGGAATTCTAGTGATAGCGAGTTTGAGAGACGGAAGTTGAGAAGTGTTGAGCCTGAAGTGGTTGTACGCGAGCTTCTGAAGGAATTTCCTGATGTTGGGAATGATTTAAAACAGCTTCTCAGTATGATTGATGATGGACAAGCTGTTGATATCAGTGGGATTTCTGAAAGGACTTTGGCCAAGCGTTTAAAGAAGCTGTTCCTTTCATTAAACCTTGAAGAATCTCAAGAGAGGGTATTCCTACTACCTTCCAACGGTCATCCCACTCTAGAGGCTATTGGACCGCTTATTCAAACTCATATGGAACAAAAGAAGAACCAGTTTGACCATTCCGTAACTCCGGATAATAAGTCGTCACCACCTTTGAATACAGAAACCACACAATCAAGCAAGGACAATGTGTCAGATTTAACACACCCAGATGGTGAAGCCACTGGTCCTAAAAGAAGGATGCTCGGCCCTGAAATGCCATCAGCTGAGCTTCTTGCTGCTGCAGCAAAACTAACCGAAGCACAAACTGAGCTTAGGGAAGTTGAGTTGGAGGAAGACCATGAATTATTTGTTGGGCCTCCACCACCTGCTATGGTTGCAGAAGCTGAAACAGCCAATGAGGCAGAACGATTTGAAGAGGTTGCAAGAATTATGGATGTTGAGGGAGATAGTCCATATGACATTTTCGGATTGAACCGAAACCTTTCTATTGAAAATATTAAGAAGAGGTATTGGAAGATGTCACTTTTAGTGCATCCAGACAAATGCTCTCATCCTCAGGCCAACCAAGCTTTTATTAGATTGAATAACGCCTTTAAGGAATTACAAGATCCTGATAAGCGGAAGGCACTGGATGACAAAATTAAATTCAAGGAGGAACAGGAGCAATTTAAAGTTGAGTTAAGAGGTATGCGTGAGGCTGCAAAATGGAGAAAATCACAAGGAATATCAATGGAGGGTGATGATGAACTCCTTGCGAACATGGATGATGAAGTTAAAGTAGAACCAAAAAGAGATGAATGGATGACAAGCCTACCTCCTGAAAGAAAGCATTCGAAGGTTCAAAATCGTTGTTTTGATGTCTTTTATTTGGAAGCATACAACGAAGCCGCTGCACTTGCTTCAAGCGAAGAAGCAAAGAAGAATAGTTCTGAATCCGCTTTAGTCGACAAATATAATCGAGAAAAACGCTCCAAACCGCTCATAGAGAAGCATCGTGAAGGGGCGAGAAGCAGTGGAAAGAAAAAATCAAAGCAGCAGGTGGGAGAGAAAGAAGAAGAGTGGGTGGGAAAACATCCATGGAAGCCTTGGGATCGTGAGAAGGATTTAACGGCTGGTAGGAAGACCATAAATTTGGATCCTGAGAACATGGCTCAAGGCTTAGGCTCCAGGTTTTCTTCAGGAAGCTACCAAAGGAATTTTCTTTAA 1716 43.71 MGSGRKKKRTECSEPSSSSPSSSDNSDSSSMRSRRHRRSGSSRREKDKKRESRIRDRERKRKDRNRERDRKMRKKKLRREAKRKRDDYGSESDAESSRSGNSSDSEFERRKLRSVEPEVVVRELLKEFPDVGNDLKQLLSMIDDGQAVDISGISERTLAKRLKKLFLSLNLEESQERVFLLPSNGHPTLEAIGPLIQTHMEQKKNQFDHSVTPDNKSSPPLNTETTQSSKDNVSDLTHPDGEATGPKRRMLGPEMPSAELLAAAAKLTEAQTELREVELEEDHELFVGPPPPAMVAEAETANEAERFEEVARIMDVEGDSPYDIFGLNRNLSIENIKKRYWKMSLLVHPDKCSHPQANQAFIRLNNAFKELQDPDKRKALDDKIKFKEEQEQFKVELRGMREAAKWRKSQGISMEGDDELLANMDDEVKVEPKRDEWMTSLPPERKHSKVQNRCFDVFYLEAYNEAAALASSEEAKKNSSESALVDKYNREKRSKPLIEKHREGARSSGKKKSKQQVGEKEEEWVGKHPWKPWDREKDLTAGRKTINLDPENMAQGLGSRFSSGSYQRNFL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6886759 6899742 + CmoCh01G009950.1 Cmo01g00995 374478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00995 571 MobiDBLite consensus disorder prediction 44 65 - -
Cmo01g00995 571 Pfam DnaJ domain 321 381 IPR001623 -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 66 81 - -
Cmo01g00995 571 PRINTS DnaJ domain signature 322 340 IPR001623 -
Cmo01g00995 571 PRINTS DnaJ domain signature 356 376 IPR001623 -
Cmo01g00995 571 PRINTS DnaJ domain signature 340 355 IPR001623 -
Cmo01g00995 571 Pfam Protein of unknown function (DUF3752) 443 562 IPR022226 -
Cmo01g00995 571 SMART dnaj_3 319 376 IPR001623 -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 1 112 - -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 479 538 - -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 470 538 - -
Cmo01g00995 571 CDD DnaJ 321 373 IPR001623 -
Cmo01g00995 571 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 6 451 - -
Cmo01g00995 571 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 459 571 - -
Cmo01g00995 571 ProSiteProfiles dnaJ domain profile. 320 384 IPR001623 -
Cmo01g00995 571 Coils Coil 260 280 - -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 205 252 - -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 556 571 - -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 211 234 - -
Cmo01g00995 571 SUPERFAMILY Chaperone J-domain 299 378 IPR036869 -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 550 571 - -
Cmo01g00995 571 Gene3D DnaJ domain 306 403 IPR036869 -
Cmo01g00995 571 MobiDBLite consensus disorder prediction 14 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00995 - - - cmo:103500427 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00995 Cmo-Chr1:6886759 Cmo10g00900 Cmo-Chr10:4413242 4.79E-11 dispersed
Cmo01g00995 Cmo-Chr1:6886759 Cmo11g00925 Cmo-Chr11:4792791 2.11E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011130 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00995 Cmo_Chr01 FPKM 1.217049 2.328774 2.677081 3.443655 1.282605 1.127914 0.977558 0.215314 0.372507 0.224114