Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01016 ATGGATGGGTTGGGACTTCGAAATGTGAGCTCACATTGCTCGATCTCTGAGATGGATGATTATGATCTGTCTCGGCTTCTTGACAAACCTAAGCTCAATATTGAGAGGCAAAGATCATTTGACGATCGGTCTCTCAGCGAGTTGTCCATCGGCCTTGCTCGGGGAGGTTTGGACAACTTTGAGAGCTCGTATTCACCTGGTGGAAGGTCAGGATTTGATACCCCTGCTTCATCTACTAGAAACACATTTGAGACCCACCCAATGATTGGTGAAGCATGGGAAGCTTTGCGGAGATCCTTGGTGTATTTTCGTGGCCAACCAGTTGGAACTATTGCAGCATATGACCATGCCTCAGAGGAAGTTTTGAACTATGATCAGGTTTTTGTTAGGGATTTTGTACCCAGTGCTCTGGCTTTTCTGATGAATGGAGAGCCGGAAATAGTTAAGAATTTCCTGTTAAAGACTCTCCAGCTTCAGGGATGGGAAAAGAAAATAGACAGATTCAAGCTTGGGGAAGGTGCAATGCCTGCTAGCTTTAAGGTTCTTCATGATCCTGTTAGAAAAACAGATACCATAGCTGCTGACTTTGGAGAGAGTGCTATTGGAAGAGTGGCTCCTGTCGACTCTGGATTCTGGTGGATCATTCTGCTCCGTGCATATACCAAGTCAACTGGTGATCTATCTCTGGCTGAAACACCAGAGTGTCAGAAGGGAATGAGGCTTATTTTAACTTTATGTCTGTCAGAGGGGTTTGATACATTCCCAACTTTACTTTGTGCTGATGGATGCTCCATGATCGATCGAAGAATGGGTATATATGGTTATCCTATTGAAATTCAAGCCCTTTTCTTTATGGCCTTGAGATGTGCTCTGGCTATGCTGAAACATGATGCTGAAGGAAAAGAATGCATAGAGCGCATTGTGAAGCGTTTGCATGCGTTAAGTTATCACATGCGGAGTTATTTCTGGCTTGACTTCCAGCAACTAAATGACATCTACCGTTATAAAACTGAAGAATATTCTCATACAGCTGTAAATAAGTTCAATGTCATCCCCGATTCAATCCCAGATTGGGTGTTTGATTTTATGCCCAAACGTGGTGGGTACTTTGTTGGTAACGTCAGTCCTGCAAGAATGGATTTTAGATGGTTTGCATTAGGTAATTGTGTTGCAATTCTGTCTTCTCTTGCCACCCCTGAGCAGTCCATGGCTATTATGGATCTTATTGAATCACGCTGGGAGGAGCTGGTTGGAGAAATGCCTTTGAAAATATCATATCCTGCCATTGAAAGCCATGAATGGCGAATTATTACTGGTTGTGATCCAAAGAATACCAGGTTTGTTCATTCCCTCATATTTCTCTTCAACTTTATAACGAGAAACCATATCAATTCATTACCCCATTTTGATGTTAATATCATGTTCCTCCTTGCTGTGGATCCAGTGCTACTATGGCTGCTAACAGCAGCGTGCATAAAAACTGGACGACCACAGATTGCAAGAAGAGCGATTGAGCTGACGGAGAGTCGTTTGCTGAAGGATGGTTGGCCGGAATACTATGATGGAAAGTTTGGAAGATATGTAGGAAAACAAGCGAGGAAATATCAGACGTGGTCCATAGCAGGATACTTAGTTGCAAAGATGATGTTGGAAGATCCATCACACTTGGGAATGATTTCACTTGAAGAGGACAAGCAAATGAAACCACTGATCAAGAGATCATCATCTTGGACCTGC 1737 43.06 MDGLGLRNVSSHCSISEMDDYDLSRLLDKPKLNIERQRSFDDRSLSELSIGLARGGLDNFESSYSPGGRSGFDTPASSTRNTFETHPMIGEAWEALRRSLVYFRGQPVGTIAAYDHASEEVLNYDQVFVRDFVPSALAFLMNGEPEIVKNFLLKTLQLQGWEKKIDRFKLGEGAMPASFKVLHDPVRKTDTIAADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLSLAETPECQKGMRLILTLCLSEGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQALFFMALRCALAMLKHDAEGKECIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPKRGGYFVGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIESRWEELVGEMPLKISYPAIESHEWRIITGCDPKNTRFVHSLIFLFNFITRNHINSLPHFDVNIMFLLAVDPVLLWLLTAACIKTGRPQIARRAIELTESRLLKDGWPEYYDGKFGRYVGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPLIKRSSSWTC 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7691207 7693231 + CmoCh01G010160.1 Cmo01g01016 374499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01016 579 PANTHER ALKALINE/NEUTRAL INVERTASE CINV2 481 578 - -
Cmo01g01016 579 SUPERFAMILY Six-hairpin glycosidases 93 546 IPR008928 GO:0005975
Cmo01g01016 579 PANTHER - 1 448 IPR024746 GO:0033926
Cmo01g01016 579 Pfam Alkaline and neutral invertase 92 447 IPR024746 GO:0033926
Cmo01g01016 579 Pfam Alkaline and neutral invertase 481 553 IPR024746 GO:0033926
Cmo01g01016 579 Gene3D - 113 444 IPR012341 GO:0005975
Cmo01g01016 579 PANTHER - 481 578 IPR024746 GO:0033926
Cmo01g01016 579 MobiDBLite consensus disorder prediction 64 83 - -
Cmo01g01016 579 PANTHER ALKALINE/NEUTRAL INVERTASE CINV2 1 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01016 - - - csv:101214631 1068.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01016 Cmo09g01119 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01016 Cmo-Chr1:7691207 Cmo11g01723 Cmo-Chr11:12196584 0 dispersed
Cmo01g01016 Cmo-Chr1:7691207 Cmo09g01119 Cmo-Chr9:6378377 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1407 . . . . . . . . . . . Cma09g01113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01016 Cmo09g01119 . . . Car09g01002 . . . . . . . . . . . . . . . . . . . Cme01g00805
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01016 Cmo_Chr01 FPKM 31.056765 32.441597 33.93248 33.29921 23.186518 19.535034 27.120722 48.882828 55.206039 61.807209