Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01025 ATGGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACATTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAATCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTTGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCCGTGTTCCATCGATATCTGCGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGATCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGCTTGAAAGCATTAATAGGTTCTGGTGACGGTGGGCGTTCCAAAATTGATGGATGGAATGACGGGGGCCTCTATCAAGATGACAGCAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGTTCTCCTGAGGTCTGTGTTAATTTTAGTCCAAATAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCTTTGAACCAGACAAATATGCAAGCAAAAGGAACTAGTTCAGATATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATACGTATGGGGTGAGGTTATTAATGATAATTTTATGAAGCCTGGGGCTGATAGAGCTGTTAACGTGAGCTCAAGGACAGATGTGCTACTTCCGAAGCCACTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGAGTCTGGCATTCTGCCATTGTCACGAGACAGGGGGAGGTCTTTACTTGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTTGGAATGGGGAAGGATGTAACACAACCTCGTCTTGTTGAAGCATTGGCAGCAACTACAATTGATCTTGTAGCATGCGGAGAGTTCCATACTTGTGCTGTTACAATGGATGGGGAACTTTATACATGGGGTGATGGTGTACATAATGCCGGGCTTCTTGGGAATGGAACTAATGTCAGCCATTGGGTGCCTAAGAGAATCTCAGGTATCCTTGAGGGGCTTCAGGTTGCAACTGTAGCATGTGGTCCGTGGCATACTGCATTGCTCACATCTATGGGGCAACTATTCACATTTGGAGATGGTACTTTTGGGGTTTTGGGTCATGGTGACAAAAAAAGCATTTCATATCCGAGAGAAGTAGAGTCTTTATCAGGCTTGAGGACAATTGCTGTTGCATGTGGAGTGTGGCATACTGCTGCTGTGGTAGAAGTTATTATGACACAATCTAGTGCAACTGTCTCATCAGGTAAATTGTTTACATGGGGTGATGGGGACAAGAATCGTTTAGGACATGGAGACAAGGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTTATTGACTACAATTTTCATAAAATTGCTTGTGGGCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACGGTTGGAAGTTCAGTTTATGGTCAGCTTGGAAATCCCCATGCTGATGGGAAGCAACCATGCTTGGTGGAAGACAAGCTTTTCAGGGAGTTTGCTGAAGAGGTTGCTTGTGGTGCATATCATGTTATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGGTTAGGCCATGGAGATGTTGAGGATCGGAAATCACCAACTTTGGTTGAAGCTTTGAAGGATAAGCATGTTAAAATCATTGCTTGTGGTTCTAACTACTCCGCAGCTATCTGTCTTCATAAATCATTATCAGGTACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGGAAAAGGCACAACTGTTACAATTGTGGGCTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCACTGGCTCCTACTCCTAGGAAACCTTATCGCGTATGTGATTCTTGTTTTTCCAAATTGATTAAGGCATCAGAATCTGGAGTTAATTACCGGAAGAACGCTGTACCTCGCCCATCAGGTGAGAACAAGGACAAGGTGGACAAGAGTGACGCAAGACCTAAAGCAGCACTTTCCAATATGGATCTGATAAAACAACTAGATAGCAAAGCAGCCAAGCAAGGGAAGAGAACGGATACATTCTCTGTTGTTCGCCCCACTCAAGCACATACTCTTCTGCAACTCAAAGATGGTCCAAACGCTGCTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCCAGATCTATGTCACCTTCGTCAAGGAGATCTAGTCCACCAAGGTCTGCTACACCTGTCCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCTGATAGCTTGAAGAAAACAAACGAACTTTTAAATCAAGAGGTTCTCATGCTGCGTGCACAGGTTGAGAGCCTAAGAAAGAGATGTGAACTTCAAGAGTTACAACTTCAGAAGTCGGAGAAGAAAGCACAAGAAGCTATTGCCTTGGCTACAGAGGAGTCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAAGATATGGCCGAAAGATTGCCCGATGGAGTAAAAATGAGCCTTCCTGGAAGTAACGACTCTGAAAACATGAGACCCTTCTATCTTCCAAATGGTATGGAGCAAAATGGTGCACGCCATTTGGCTTCCAATGGAGAGCGTCAATCAGAATCTGATTCACACAGCTCTGTGTCTTTGGCTTCTTCAATGGCAACTGACTATTCCTTAAGTAATGGGTTTCAAGGTACACCTAATTCATGTGGAGAATTCCCTGCAAGTAATGAAACTAACTCATCCATGGAGCTCGGGCAATTTACCTCTGATGGAATAGACGACGATTCAGATGTTAGACTGTCTTATGGTCATAGAGGGGTTTGGGAAAGCCGCAGCAGCAGCATGTCGGAGGGAGCAAATAGCTCGGGTCCTTTACTAGATAGTGAGAGTAACACAAGATCTAGAAGTTCTGCGTTGCCAAGTAATGACAATCAAGTTGAAGCTGAATGGATTGAACAATATGAACCCGGCGTCTACATAACTTTGATGGCACTTCGTGATGGAACTAGAGATCTTAAACGAGTTCGCTTCAGCCGAAGACGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAACCGCGACAAAGTTTACGAGAAATATAATGTTCGTGGAGCTGAAAAATCCTCAATTTCTTCAAATCCGGCATGA 3348 43.64 MADLVSYGNANRDIEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKFASVSRIIPGQRTAVFHRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALIGSGDGGRSKIDGWNDGGLYQDDSSDLTSSSPSDSSNSVTRDISSPEVCVNFSPNKSPTSVRSENSTRSHVPLNQTNMQAKGTSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYVWGEVINDNFMKPGADRAVNVSSRTDVLLPKPLESNIVLDAQHIACGVWHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTIDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTNVSHWVPKRISGILEGLQVATVACGPWHTALLTSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLSGLRTIAVACGVWHTAAVVEVIMTQSSATVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPHADGKQPCLVEDKLFREFAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVEALKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKPYRVCDSCFSKLIKASESGVNYRKNAVPRPSGENKDKVDKSDARPKAALSNMDLIKQLDSKAAKQGKRTDTFSVVRPTQAHTLLQLKDGPNAADIRRLAPKPIPMANGVNSRSMSPSSRRSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELQLQKSEKKAQEAIALATEESAKSKAAKEVITSLTAQIKDMAERLPDGVKMSLPGSNDSENMRPFYLPNGMEQNGARHLASNGERQSESDSHSSVSLASSMATDYSLSNGFQGTPNSCGEFPASNETNSSMELGQFTSDGIDDDSDVRLSYGHRGVWESRSSSMSEGANSSGPLLDSESNTRSRSSALPSNDNQVEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGAEKSSISSNPA 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8025658 8035352 - CmoCh01G010250.1 Cmo01g01025 374508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 924 947 - -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Cmo01g01025 1115 CDD FYVE_like_SF 630 683 - -
Cmo01g01025 1115 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 960 985 - -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 346 398 IPR000408 -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Cmo01g01025 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 782 812 - -
Cmo01g01025 1115 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 703 720 - -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Cmo01g01025 1115 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Cmo01g01025 1115 SMART fyve_4 619 688 IPR000306 GO:0046872
Cmo01g01025 1115 CDD PH_PLC_plant-like 12 123 - -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Cmo01g01025 1115 SUPERFAMILY FYVE/PHD zinc finger 625 692 IPR011011 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 1005 1041 - -
Cmo01g01025 1115 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 773 812 - -
Cmo01g01025 1115 Gene3D - 155 357 IPR009091 -
Cmo01g01025 1115 Gene3D - 454 633 IPR009091 -
Cmo01g01025 1115 Gene3D - 358 453 IPR009091 -
Cmo01g01025 1115 Gene3D - 13 127 IPR011993 -
Cmo01g01025 1115 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1103 - -
Cmo01g01025 1115 Pfam Transcription factor regulating root and shoot growth via Pin3 1045 1100 IPR013591 -
Cmo01g01025 1115 SUPERFAMILY PH domain-like 13 123 - -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 695 721 - -
Cmo01g01025 1115 Pfam Transcription factor BRX N-terminal domain 868 902 IPR027988 -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 960 1041 - -
Cmo01g01025 1115 Coils Coil 817 865 - -
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 144 200 - -
Cmo01g01025 1115 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1103 - -
Cmo01g01025 1115 ProSiteProfiles BRX domain profile. 1046 1101 IPR013591 -
Cmo01g01025 1115 Pfam FYVE zinc finger 626 686 IPR000306 GO:0046872
Cmo01g01025 1115 MobiDBLite consensus disorder prediction 916 947 - -
Cmo01g01025 1115 SUPERFAMILY RCC1/BLIP-II 233 621 IPR009091 -
Cmo01g01025 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Cmo01g01025 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 693 IPR013083 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Cmo01g01025 1115 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01025 - - - csv:101214149 1976.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01025 Cmo15g00619 CCT
Cmo01g01025 Cmo04g02551 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01025 Cmo-Chr1:8025658 Cmo04g02551 Cmo-Chr4:18693764 0 dispersed
Cmo18g01205 Cmo-Chr18:12024370 Cmo01g01025 Cmo-Chr1:8025658 3.27E-32 transposed
Cmo01g01025 Cmo-Chr1:8025658 Cmo09g01105 Cmo-Chr9:6215159 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01025 Cmo_Chr01 FPKM 14.7398 14.230034 15.073793 14.957225 11.489996 11.975766 12.491469 14.08827 14.953198 14.834455