Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01027 ATGGTTGATATTTGTCAGAAATGTGGAGACAGAGGTTTTGTTGAGGCTTTAAATTATTGTAAAAAATGCCAGACTTATCCTATCCATCGCTATTGCTTAGATGCATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAATCATGTTGCCAGCAGTAAAATCTGATGTCAAGTTAAAAAAGAAAAAGTGTGTCGAACAATCAAAGAAAAATGATACGACACCTGGAGGGCTGGGAGAGAAAGTTCGAGAAGGTGGGGCCAATCATGGTGAAGTCACAACATCATCTGATGCATCCAACTTTTTAGGGCACAACTGTTATGTTGCACGGCCTATAGTAGATCCCATTTGGAGGGGAACGTTAAAATTTTGGGTCAAAAGTTTTGCCAGAGTTGGTGTACTTGTTGCCCATATGTCTAGCTTAGCATGCTCAAAAGTGTATGAGGAGGCAAAATCGTTACCCGAGTCACTCCCTGTTGAATTACTCTGTAGATGTGAAATATGGCCTAGAGGATTTGAGAAATTAGGGCCAACTGATCTAAGTATTGCTCTTTATTTCTTTCCAGAAGACGAAAGAAGCCAAAGGGCATTTGATCTTCTGGTCAATGCAATGATGTGCAAGGACCTAGCCATGAAAGCTGTCCTGAAAAATGCTGAGCTATTAGTTTTTACTTCGTCCATGTTACCAATGCGATACTGGAGATTTCAAACAAAGTACTATTTGTGGGGTGTGTTCCGGGGAAAGCAAGCTGCACAACCAAGAAATAATGTGGCTTCTGAGACAAGTTTTACTGAGTCATTACCTTGA 825 40.36 MVDICQKCGDRGFVEALNYCKKCQTYPIHRYCLDALPKTFDEYVTWFCEDCEAIMLPAVKSDVKLKKKKCVEQSKKNDTTPGGLGEKVREGGANHGEVTTSSDASNFLGHNCYVARPIVDPIWRGTLKFWVKSFARVGVLVAHMSSLACSKVYEEAKSLPESLPVELLCRCEIWPRGFEKLGPTDLSIALYFFPEDERSQRAFDLLVNAMMCKDLAMKAVLKNAELLVFTSSMLPMRYWRFQTKYYLWGVFRGKQAAQPRNNVASETSFTESLP 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8044477 8049465 + CmoCh01G010270.1 Cmo01g01027 374510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01027 274 MobiDBLite consensus disorder prediction 74 98 - -
Cmo01g01027 274 PANTHER OS12G0161900 PROTEIN 1 61 - -
Cmo01g01027 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 54 IPR013083 -
Cmo01g01027 274 PANTHER OS12G0161900 PROTEIN 68 265 - -
Cmo01g01027 274 PANTHER - 1 61 - -
Cmo01g01027 274 PANTHER - 68 265 - -
Cmo01g01027 274 SUPERFAMILY FYVE/PHD zinc finger 3 57 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01027 - - - cmax:111480637 534.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01027 Cmo-Chr1:8044477 Cmo20g00905 Cmo-Chr20:4604698 2.51E-21 dispersed
Cmo01g01027 Cmo-Chr1:8044477 Cmo09g01104 Cmo-Chr9:6186937 1.94E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1242 . . . . . . . . . . Cma01g00990 . Car01g00881 . . Cpe06g00895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g1573 Cmo01g01027 . . . . Car09g00993 . . Bhi09g01502 Tan01g3380 Cmetu01g2157 . . . . Cla09g00923 Cam09g0975 Cec09g0980 Cco09g0986 . . Cre09g0944 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005025 1 2 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 0 0 1 1 1 1 11 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01027 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0