Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01036 ATGTCATCCACTGTCGGTCAAGTCATCAAATGCAAGGCTGCTGTTGCATGGGAGGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAAGTGGCACCACCGCAGGCCAATGAAGTCCGATTGAGGATCCTCTTCACATCTCTCTGCCACACCGATGTTTATTTCTGGGAAGCCAAGGGCCAAGCCCCGTTGTTCCCTCGCATCTTTGGACATGAAGCTGGAGGTATTGTAGAGAGTGTTGGAGAAGGAGTCACAAATCTTAAACCAGGAGATCATGTTCTTCCTATTTTCACTGGTGAATGTGGGGATTGTCGCCATTGCCAGTCGGAAGAGAGCAACCTGTGTGATCTTCTTCGTATCAACACAGACCGTGGAGTCATGCTCAATGATGGCAAGACCAGATTCTCCATCAATGGACAGCCCATTTATCACTTCGTTGGAACCTCCACTTTCAGTGAATACACCGTTATTCACGTTGGCTGTTTAGCCAAGATCAACCCAGCTGCCCCTCTCGACAAAGTCTGTGTTCTTAGCTGCGGCATTTCCACAGGTCTTGGTGCCACTTTGAATGTTGCAAAGCCTACAAAGGGTTCATCTGTTGCCATCTTTGGACTTGGAGCTGTTGGCCTCGCTGCGGCTGAAGGAGCAAGAATTGCCGGAGCATCCAGGATCATTGGTGTTGATCTGAACCCAGCTCGATTCGAAGAAGGTACAATCAAGCAACATAATGAGGTTTTAAAGGGGATTTTGATGTATGACATGATATATAAACCGAGGAAATTCGGATGCAATGAGTTTTTGAATCCAAGGGATTACAAGAGGCCAGTTCAAGAGGTGATAGCAGAGATGACAGACGGAGGTGTCGACCGGAGTGTGGAATGCACCGGAAGCATTCATGCGATGATCTCAGCCTTCGAATGCGTTCACGACGGGTGGGGTGTTGCAGTACTAGTGGGAGTACCAAGCAGAGACGACGCATTCAAAACTCATCCCATGAAGCTCCTGAACGAGAGGACTCTAAAGGGTACCTTCTTCGGCAACTACAAGCCCCGATCCGACATTCCCGGAGTGGTCGAGAAGTACATGAACCAGGAGCTGGAATTGGAGAAGTTCATCACACATACAGTGCCGTTTTCTGAGATCAACAAGGCATTCGATTACATGCTGAAAGGGGAGTCGATTCGATGCATTATTCGAATGGATGAGTGA 1206 48.76 MSSTVGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRLRILFTSLCHTDVYFWEAKGQAPLFPRIFGHEAGGIVESVGEGVTNLKPGDHVLPIFTGECGDCRHCQSEESNLCDLLRINTDRGVMLNDGKTRFSINGQPIYHFVGTSTFSEYTVIHVGCLAKINPAAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPARFEEGTIKQHNEVLKGILMYDMIYKPRKFGCNEFLNPRDYKRPVQEVIAEMTDGGVDRSVECTGSIHAMISAFECVHDGWGVAVLVGVPSRDDAFKTHPMKLLNERTLKGTFFGNYKPRSDIPGVVEKYMNQELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMDE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8116082 8118127 - CmoCh01G010360.1 Cmo01g01036 374519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01036 401 SUPERFAMILY GroES-like 4 186 IPR011032 -
Cmo01g01036 401 Pfam Zinc-binding dehydrogenase 206 354 IPR013149 -
Cmo01g01036 401 CDD alcohol_DH_plants 9 398 - -
Cmo01g01036 401 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Cmo01g01036 401 Gene3D - 19 391 - -
Cmo01g01036 401 PANTHER ALCOHOL DEHYDROGENASE 4 399 - -
Cmo01g01036 401 SUPERFAMILY GroES-like 349 398 IPR011032 -
Cmo01g01036 401 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 362 IPR036291 -
Cmo01g01036 401 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cmo01g01036 401 Gene3D - 183 342 - -
Cmo01g01036 401 PANTHER ALCOHOL DEHYDROGENASE 1 4 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01036 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - csv:101209854 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01034 Cmo-Chr1:8082928 Cmo01g01036 Cmo-Chr1:8116082 0 dispersed
Cmo01g01036 Cmo-Chr1:8116082 Cmo09g01096 Cmo-Chr9:6085628 0 dispersed
Cmo01g01035 Cmo-Chr1:8090366 Cmo01g01036 Cmo-Chr1:8116082 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01036 Cmo_Chr01 FPKM 11.106713 12.284595 11.540066 11.374833 18.487961 16.962177 18.04137 13.048674 11.758889 12.662433