Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01038 ATGCTGATGGATACTAATTTCTCGGCGTCGAAACCACCGCAGCCAGCGGCCGCGATGGACATCGAACAGATGTCACAGAATCCCCAGCGTGGTTCCTACCACCGCCGCTCCCTCTCCGACACTTCCTTCCGCTTCCCAAACCTCGATGAGCTTCTCTTCTTCGATCCTTTAGAGCTCGACCTCTCGATTCTCACTTCCCCTTCTTCTTCTCCTCCCGGCGCCGCTGCCATGGCCGTCGATTCGTCGTCTAATTCCAAATTATCTAGTGACGCCGTTCACCCTAAGCCGGAGCCGATTAACTCTGGGTCATTCGGCGGGCACTTGCGCAGCTTGTCGGTGGATTCTGATTTCTTCAAGAATCTGGACCTCGGCGGTGACGGTGGATCGATCGATTCATTGGGGAGGAAAACTCCGGTGAGTGAACAGCGGCAAGTTCGTCATCGACATAGCTTGTCTATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAACCCTAATGATCGATGGAGTGAAGAAGGCAATGGACCCGGAAAGACTTGCGGAGTTAGCCCTAATTGATCCGAAAAGAGCAAAAAGGATTCTTGCCAATAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGGTTCGGTACACTAATGAATTGGAGAGGAAGGTTCAGACTCTGCAATCTGAAGCTACCACTCTGTCTGCTCAGGTGACAATGCTACAGCAGGCCAGGTTAGTATCTTTGTTCGCCTGTTATGCTTTGATGAGACAATTTCATGTTATGCAGAGAGAGACTACTGAATTAGCCGTGGAAAATAAGGAACTTAAACTTCGGTTACAGGCTATGGATCAGCAAGCACAACTCCGGGATGATCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTCCATTGATCAATGGAAATCCTTTCAACCGACCCCCTCAATATCCATCATCCCGACCGCCTGTACACCATTTTAGTAGCTCCCACGCTCAGCAGGGTCAACAGCAGCCGTCACCCAGCTTGGCCACAAACCTGCAGCAACCAGATCCAAAATGGATGAACTCGTCCCAGCTTCTCGGTCGCAATCCCGATGGCCAAGCAAAACCTTAG 1125 50.84 MLMDTNFSASKPPQPAAAMDIEQMSQNPQRGSYHRRSLSDTSFRFPNLDELLFFDPLELDLSILTSPSSSPPGAAAMAVDSSSNSKLSSDAVHPKPEPINSGSFGGHLRSLSVDSDFFKNLDLGGDGGSIDSLGRKTPVSEQRQVRHRHSLSMDGSSSSFEADSTLMIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKVRYTNELERKVQTLQSEATTLSAQVTMLQQARLVSLFACYALMRQFHVMQRETTELAVENKELKLRLQAMDQQAQLRDDLSEALKEEVQRLRIAAGQVPLINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQPSPSLATNLQQPDPKWMNSSQLLGRNPDGQAKP 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8193096 8195042 + CmoCh01G010380.1 Cmo01g01038 374521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01038 374 MobiDBLite consensus disorder prediction 132 158 - -
Cmo01g01038 374 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 250 345 - -
Cmo01g01038 374 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 238 - -
Cmo01g01038 374 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 250 345 - -
Cmo01g01038 374 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 9 238 - -
Cmo01g01038 374 CDD bZIP_plant_RF2 190 240 IPR044759 GO:0003700|GO:0006355
Cmo01g01038 374 SUPERFAMILY Leucine zipper domain 189 239 IPR046347 GO:0003700|GO:0006355
Cmo01g01038 374 Gene3D - 188 240 - -
Cmo01g01038 374 Coils Coil 212 232 - -
Cmo01g01038 374 MobiDBLite consensus disorder prediction 308 374 - -
Cmo01g01038 374 MobiDBLite consensus disorder prediction 68 90 - -
Cmo01g01038 374 MobiDBLite consensus disorder prediction 325 367 - -
Cmo01g01038 374 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 238 IPR004827 GO:0003700|GO:0006355
Cmo01g01038 374 Pfam bZIP transcription factor 189 237 IPR004827 GO:0003700|GO:0006355
Cmo01g01038 374 MobiDBLite consensus disorder prediction 68 103 - -
Cmo01g01038 374 SMART brlzneu 185 247 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01038 Cmo-Chr1:8193096 Cmo20g00333 Cmo-Chr20:1631748 3.60E-54 dispersed
Cmo04g02560 Cmo-Chr4:18755359 Cmo01g01038 Cmo-Chr1:8193096 1.58E-81 transposed
Cmo09g01090 Cmo-Chr9:6006833 Cmo01g01038 Cmo-Chr1:8193096 1.23E-178 transposed
Cmo01g01038 Cmo-Chr1:8193096 Cmo04g02559 Cmo-Chr4:18754570 2.92E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9081 PF00170 bZIP_1 3.30E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01038 K20557 - csv:101207973 535.798