Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01045 ATGTCACTAGTTGGGCCATCCGATCCATCTCCGTTGTCGTATGGAACTCGCAAACTCTACTCGTTGAAAGGAACCAAGAATGCTTCCGACTTGTCCACGCAGAGATTTGGTTCCGAAAAGAATAGGACGATGTATATGAATGATTCGTATTACAGTGAGAGCTACGACAAGTATTTCCTTGACTTCCCGATCGAAGAGCTATCGGTTTCTGGCATTTCTACTGATTCGTTTCATCCCAACGCTGCTTTGTATGGGATAAGGGCTGATTCTCTATCCCCTTTGTGTGATTCGTTTACATGTTTTGATGCTTATCAATCGAACTCATACTCGGTTTGCCTTGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAAGAATTGGAGAGAGATCTGCTCGGCGAACCCGATTCTGCTGATTACGAGGATGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAATGGGCGAATTCAATTCAAGATGCATTGCTTCATGACTCGCCGAAGGAATCGTCATCGACCAATTCTAATTTCAGTACCATTAGTAGCAATAAGGATGCATCTCAGATATCATCACAGAATCCCAGACAGATACTTATGGAATGTGCTTCTGCTATCTCAGAAGACAACTTTGAAGAAGCATCAGCTATGATAGAACAGCTCCGGGGTATGGTCTCGGTTCAGGGAGATCCCTCACAGAGGATCGCAGCGTATTTAGTGGAAGGTCTTGCTGCCCGGTTGTTGGAATCGGGAAAATGTCTTTATAAAGCCTTGAGATGCAAAGAACCTCCTTCCTCAGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTTGGCTTCATGGCTGCAAACTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTGGCAGCTCAGCCAGGTAAGCCACCACATTTGAGGCTAACTGGTGTTGATGACCCCGAATCGGTACAGCGCCCTGTTGGAGGTCTTAGACACATTGGACAAAGGCTCGAGCAGCTGGCGAAAGCGCTGCGGGTTCCATTTGAATTTCACGCAATCGCCTCAAATGCTTCAGATGTCACTCCCTCAATGCTCGCCTCCCGGCCTGGAGAAGCACTCATAGTAAACTTTGCTTTTTTACTTCACCACATGCCAGACGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGAATGGTCAAGGGCCTGAATCCCAAACTGGTAACAGTCGTCGAACAGGACATGAATGCAAATACGACCCCATTCGTTTCAAGATTCATCGAAACGTATAACTACTACGCAGCTGTATACAACTCTCTCGATGTAACACTTCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGACAATGCTTGGCGAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGCGATACGAAGTCGCTGGGAAATGGCGGGCAAGAATGACAATGGCTGGCTTCACTTCGTGTTCGATGAGCGAAAAGGTGACCGACCCGATACGTAAGCTTATTATGGAGGAGTATTGCGAGAGATTCAAGATGTATGAGGAAATGGGTACACTCCATTTTGGATGGGAAGAGAAAAGCTTGATAGTTACTTCAGCATGGAGGTAA 1731 45.47 MSLVGPSDPSPLSYGTRKLYSLKGTKNASDLSTQRFGSEKNRTMYMNDSYYSESYDKYFLDFPIEELSVSGISTDSFHPNAALYGIRADSLSPLCDSFTCFDAYQSNSYSVCLESTSPEQLDFEDDQVRQKLQELERDLLGEPDSADYEDEMFANGQSMEIDSEWANSIQDALLHDSPKESSSTNSNFSTISSNKDASQISSQNPRQILMECASAISEDNFEEASAMIEQLRGMVSVQGDPSQRIAAYLVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFHAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKGLNPKLVTVVEQDMNANTTPFVSRFIETYNYYAAVYNSLDVTLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSEKVTDPIRKLIMEEYCERFKMYEEMGTLHFGWEEKSLIVTSAWR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8241594 8243324 + CmoCh01G010450.1 Cmo01g01045 374528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01045 576 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 575 IPR030011 GO:0003700|GO:0005634
Cmo01g01045 576 Pfam GRAS domain family 206 576 IPR005202 -
Cmo01g01045 576 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
Cmo01g01045 576 MobiDBLite consensus disorder prediction 176 203 - -
Cmo01g01045 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 575 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00641 Cmo-Chr1:3281533 Cmo01g01045 Cmo-Chr1:8241594 3.39E-68 dispersed
Cmo01g01045 Cmo-Chr1:8241594 Cmo02g00224 Cmo-Chr2:1031828 7.78E-154 dispersed
Cmo02g00793 Cmo-Chr2:4900767 Cmo01g01045 Cmo-Chr1:8241594 1.04E-63 dispersed
Cmo15g01137 Cmo-Chr15:7935986 Cmo01g01045 Cmo-Chr1:8241594 8.28E-88 dispersed
Cmo20g00427 Cmo-Chr20:2014095 Cmo01g01045 Cmo-Chr1:8241594 2.43E-64 dispersed
Cmo01g01045 Cmo-Chr1:8241594 Cmo20g00673 Cmo-Chr20:3276967 4.24E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9083 PF03514 GRAS 3.30E-130 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01045 - - cmax:111480557 1122.07