Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g01046 | ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCAGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGATGATGAGTACTCCATCGGAACCGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGAAATTCAAAAGTTTCACAAGTTAAAGGGGATGATGATGAGGATGAGGATGTGGATAGTGTTTCAGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTTCTGCTTCCAGCTTTGGTTTACTTGAGGAGGAGGGAGAGGATGGTGCTGATAATGATGATGAATCTGTGTTAACTGCAGAAAAGGATGACGATGAAGGGGATGATTCTGAAATCAAGTTTTCAGGTAAGAAGTCGTCGTCGAAGTCTTCCAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCAGTGCCCTTGATGACGAGGAAGATGAGGATGTAATTGATAATGAGAACAAAGTTGACGAAGGGATTGATGATGAGCCTGTTATTGCATTTACAGGTAAGAAAAAGTCATCAAAAGGTGCCAAAAAGGCTGTGAATGCATTTTCAGGTTTTAGTGGTCTTGATTATCAGGATGAGGACAGAGATGCTGACAAGGTTGAGGATGAAGATGTTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCAAAGAAAAGTGGCAATTCGGTTAGTGTAGCATTTGCTGATGAGGATAATGATGGCGATGTTTCTATTTCAGAGCCAAATAAATTACAAAATGATGGTGTTGATGAAGACGATGACAATGTTATTGCGTTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTTCTTTTGTCACATTAAGTGATGAAAATCCGCTGGGGAATGATGTTAAAGATGTATTCGTACCCGAAGTACTTAATTCAGCAAGTACCAGTTTTGCTTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTAGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTACTATATCAAAACTAGCAGACCCTCCTCTTTCTTCACAAGAGGCCAAAGTTGAGAACCCACCTGACCTTGTAACTCCTCCTGATGCATCAGCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAAACGGCTGCAGCTAGGAAGAAGAAAAAGAAAAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGGCAGCAGCTGCTGAAGGGAAGGATGAGAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGATAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCTATGGCTAGGAGGAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAGGAAGAGAAATTGAGGAAGGAGGAAGAAGAGAGACGGAGGCAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAAAAGCTCCTAAAGAAGAAACAAGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTTCAGGGGGTTTGCCACTGTCTGCATCTGACCCTAGTGCACCAACCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCTGCCCATCATCAAACAAATGGTAGTGCGCAAACTAAGGTGATGGAACATACAGAAGAAAAGATACAAGAAAAAGATGTGGCAGATTCTGAAATATTGGAGTCTGAGAAGATTGAACCTGTTGAGTCGATGCACGTGGAGGAAAAATCGGATATTATTGAGGTTTCTGAAGATAATGAAATTAAAAAAGAGGACGAGGATGAGGATGAGGATGAGGATGAGTGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGATTCAGAGACTGAGAATGGCATGAAAAAGGATGGAAAGAATGGTGCACAAACTTCACGTGATGCAGGATTTTTTTTTGTTCGATCTTTCTATTGCTGTCTACTTGTTCATAGTGAAATCATATTCCCCCACTTCACATCAACGAGTCACAAGTCAAGTGAATCAATTTCTTCCATTCCATTGTTGCCAAAAGGTGCCAAGCCAATTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAGGTATCAAGATATTGAAAACAGAAAGAATCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAACGAAAAGATGATGCTGTTAAGAAAAAAATTTCAACATCAGATACTACTACTAAACAACAGGAAGAAAATCTTCGCTCACCCATTTGTTGTATTATGGGCCACGTTGACACTGGTAAAACCAAACTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACGCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGATGGTTCCTGGCTTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAATTTGCGTTCTCGTGGTTCGGGTTTATGTGACCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTAAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTGAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAAGGATTGAATACCGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTTCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAACGGTGTACTGCATGAAGGAGATCAAATAGTTGGCCCAATTGTTACTACTATTCGAGCCCTATTGACCCCCCATCCAATGAAGGAGCTCCGAGTGAAGGTAGGAAACAATGTAATTCAAAGCGAGGAATTTCCAGTTTGGTTAGCATGGGCGATTCTAGCTGGAGGGGGAAGGTTGGTGGTTGGTAGAGGGAATGTGGTCATTGAATTTTATCTGCCTGGATATTTCCGAGAATTGTCACTAGAATGGCTTAGATTTTGTTTGGCCTTCACTAGAATGGCTGAAGTCCTATCTGGCCTCTATGAATATGCAATCCTTGACGAGACACTATTAAAATTTATATGCAAGTGTTGCATTGAACAGCTGATGATGTTGTGTAATTTTCAGGGAACGTATCTGCATCATAAAGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGAAAGTAATGTCAGGATTCAGCTTTCTTACATCCCAGCTGGCCAGCTTCATTGAAGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTAATGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGAGTCCGGCTGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGCGTAATGCTTGAAAAGAAAAAGGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATCTATCACTTGTTCGACCAGTTCAAGGCCTACATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCTAACTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTAATTGATGGCATTGCCAAGTTTCTCATGTACTGGCCCTGTTTGAGCCCTCATTGTCTCATGATAGCTCGTACTCTTTCCCTAAGACTTTATCTATACCCCTCTAGGGTTGGCACACCAATCTGTATTCCTCAACGAGAATTTATTGAGATTGGTCGCATCGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAGATTGCCATTAAGGTAACCCCTTTTGTTATTTTACTGATTGTTGGGCACTCTTCGGAGGAACAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGATGATTTGTCCACGGAGGAGTGGAGACTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA | 4650 | 41.63 | MGRKKPTARDDDSAPAAAQGGGKSKKKTFAVDDDEYSIGTELSEEAPVQEEKVVITGKKKGKKGNSKVSQVKGDDDEDEDVDSVSEIVITGKKKGKSKKGGSSSAFSASSFGLLEEEGEDGADNDDESVLTAEKDDDEGDDSEIKFSGKKSSSKSSKKSGFSAVSAFSALDDEEDEDVIDNENKVDEGIDDEPVIAFTGKKKSSKGAKKAVNAFSGFSGLDYQDEDRDADKVEDEDVTTISFSGKKKKSAKGSKKSGNSVSVAFADEDNDGDVSISEPNKLQNDGVDEDDDNVIAFSGKKKSSKKKSSSSFVTLSDENPLGNDVKDVFVPEVLNSASTSFASDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKLADPPLSSQEAKVENPPDLVTPPDASAEKEAEEESTETAAARKKKKKKEKEKEKKAAAAAAAAAEGKDEKIEEVKTEIIEPKKGAAKSKVPDKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASSGGLPLSASDPSAPTKRPKYQTKKSKPAHHQTNGSAQTKVMEHTEEKIQEKDVADSEILESEKIEPVESMHVEEKSDIIEVSEDNEIKKEDEDEDEDEDEWDAKSWDDAVVDLSLKSSFADEELDSETENGMKKDGKNGAQTSRDAGFFFVRSFYCCLLVHSEIIFPHFTSTSHKSSESISSIPLLPKGAKPIAPAQKSLPSQPIRYQDIENRKNQPEVEVVDKGKRKDDAVKKKISTSDTTTKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLMVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKVGNNVIQSEEFPVWLAWAILAGGGRLVVGRGNVVIEFYLPGYFRELSLEWLRFCLAFTRMAEVLSGLYEYAILDETLLKFICKCCIEQLMMLCNFQGTYLHHKEIKAAQGIKITGQKVMSGFSFLTSQLASFIEGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIDGIAKFLMYWPCLSPHCLMIARTLSLRLYLYPSRVGTPICIPQREFIEIGRIASIENNHKPVDYAKKGQKIAIKVTPFVILLIVGHSSEEQQKMYGRHFDLEDELDDLSTEEWRLVVKLKNLFKIQ | 1549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8244410 | 8261004 | - | CmoCh01G010460.1 | Cmo01g01046 | 374529 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 578 | 596 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 1 | 323 | - | - | |
Cmo01g01046 | 1549 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 828 | 1044 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 338 | 352 | - | - | |
Cmo01g01046 | 1549 | TIGRFAM | small_GTP: small GTP-binding protein domain | 833 | 958 | IPR005225 | GO:0005525 | |
Cmo01g01046 | 1549 | Gene3D | Translation factors | 1192 | 1278 | - | - | |
Cmo01g01046 | 1549 | Gene3D | Translation factors | 1392 | 1549 | - | - | |
Cmo01g01046 | 1549 | Coils | Coil | 1374 | 1394 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 795 | 819 | - | - | |
Cmo01g01046 | 1549 | Coils | Coil | 486 | 553 | - | - | |
Cmo01g01046 | 1549 | Gene3D | Translation factors | 1050 | 1119 | - | - | |
Cmo01g01046 | 1549 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 820 | 1108 | IPR027417 | - | |
Cmo01g01046 | 1549 | Coils | Coil | 422 | 458 | - | - | |
Cmo01g01046 | 1549 | SUPERFAMILY | Translation proteins | 1457 | 1535 | IPR009000 | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 416 | 435 | - | - | |
Cmo01g01046 | 1549 | CDD | IF2_eIF5B | 831 | 1041 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 664 | 683 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 618 | 663 | - | - | |
Cmo01g01046 | 1549 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1262 | 1391 | IPR036925 | - | |
Cmo01g01046 | 1549 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 764 | 1108 | - | - | |
Cmo01g01046 | 1549 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1456 | 1549 | - | - | |
Cmo01g01046 | 1549 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1182 | 1428 | - | - | |
Cmo01g01046 | 1549 | Gene3D | - | 1279 | 1385 | IPR036925 | - | |
Cmo01g01046 | 1549 | Pfam | Translation-initiation factor 2 | 1266 | 1378 | IPR023115 | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 338 | 718 | - | - | |
Cmo01g01046 | 1549 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 764 | 1108 | IPR015760 | - | |
Cmo01g01046 | 1549 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1 | 721 | IPR015760 | - | |
Cmo01g01046 | 1549 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1456 | 1549 | IPR015760 | - | |
Cmo01g01046 | 1549 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1182 | 1428 | IPR015760 | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 795 | 823 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 456 | 570 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 116 | 140 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 282 | 298 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 366 | 381 | - | - | |
Cmo01g01046 | 1549 | Gene3D | - | 821 | 1049 | IPR027417 | - | |
Cmo01g01046 | 1549 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1 | 721 | - | - | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 169 | 187 | - | - | |
Cmo01g01046 | 1549 | Pfam | Elongation factor Tu GTP binding domain | 832 | 1040 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | PRINTS | GTP-binding elongation factor signature | 912 | 923 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | PRINTS | GTP-binding elongation factor signature | 832 | 845 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | PRINTS | GTP-binding elongation factor signature | 896 | 906 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | PRINTS | GTP-binding elongation factor signature | 948 | 957 | IPR000795 | GO:0003924|GO:0005525 | |
Cmo01g01046 | 1549 | MobiDBLite | consensus disorder prediction | 696 | 718 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01046 | Cmo-Chr1:8244410 | Cmo08g00451 | Cmo-Chr8:2783368 | 3.91E-23 | dispersed | |
Cmo01g01046 | Cmo-Chr1:8244410 | Cmo09g01088 | Cmo-Chr9:5960986 | 9.28E-154 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g01046 | K03243 | - | zju:107427478 | 931.784 |