Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01046 ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCAGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGATGATGAGTACTCCATCGGAACCGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGAAATTCAAAAGTTTCACAAGTTAAAGGGGATGATGATGAGGATGAGGATGTGGATAGTGTTTCAGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTTCTGCTTCCAGCTTTGGTTTACTTGAGGAGGAGGGAGAGGATGGTGCTGATAATGATGATGAATCTGTGTTAACTGCAGAAAAGGATGACGATGAAGGGGATGATTCTGAAATCAAGTTTTCAGGTAAGAAGTCGTCGTCGAAGTCTTCCAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCAGTGCCCTTGATGACGAGGAAGATGAGGATGTAATTGATAATGAGAACAAAGTTGACGAAGGGATTGATGATGAGCCTGTTATTGCATTTACAGGTAAGAAAAAGTCATCAAAAGGTGCCAAAAAGGCTGTGAATGCATTTTCAGGTTTTAGTGGTCTTGATTATCAGGATGAGGACAGAGATGCTGACAAGGTTGAGGATGAAGATGTTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGGTTCAAAGAAAAGTGGCAATTCGGTTAGTGTAGCATTTGCTGATGAGGATAATGATGGCGATGTTTCTATTTCAGAGCCAAATAAATTACAAAATGATGGTGTTGATGAAGACGATGACAATGTTATTGCGTTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTTCTTTTGTCACATTAAGTGATGAAAATCCGCTGGGGAATGATGTTAAAGATGTATTCGTACCCGAAGTACTTAATTCAGCAAGTACCAGTTTTGCTTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTAGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTACTATATCAAAACTAGCAGACCCTCCTCTTTCTTCACAAGAGGCCAAAGTTGAGAACCCACCTGACCTTGTAACTCCTCCTGATGCATCAGCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAAACGGCTGCAGCTAGGAAGAAGAAAAAGAAAAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGGCAGCAGCTGCTGAAGGGAAGGATGAGAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGATAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCTATGGCTAGGAGGAAAGAAGAAGAAGAGAGAAGGAAAAGGGAAGAGGAAGAGAAATTGAGGAAGGAGGAAGAAGAGAGACGGAGGCAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAAAAGCTCCTAAAGAAGAAACAAGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTTCAGGGGGTTTGCCACTGTCTGCATCTGACCCTAGTGCACCAACCAAACGACCAAAATACCAGACAAAGAAGTCAAAACCTGCCCATCATCAAACAAATGGTAGTGCGCAAACTAAGGTGATGGAACATACAGAAGAAAAGATACAAGAAAAAGATGTGGCAGATTCTGAAATATTGGAGTCTGAGAAGATTGAACCTGTTGAGTCGATGCACGTGGAGGAAAAATCGGATATTATTGAGGTTTCTGAAGATAATGAAATTAAAAAAGAGGACGAGGATGAGGATGAGGATGAGGATGAGTGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGATTCAGAGACTGAGAATGGCATGAAAAAGGATGGAAAGAATGGTGCACAAACTTCACGTGATGCAGGATTTTTTTTTGTTCGATCTTTCTATTGCTGTCTACTTGTTCATAGTGAAATCATATTCCCCCACTTCACATCAACGAGTCACAAGTCAAGTGAATCAATTTCTTCCATTCCATTGTTGCCAAAAGGTGCCAAGCCAATTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAGGTATCAAGATATTGAAAACAGAAAGAATCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAACGAAAAGATGATGCTGTTAAGAAAAAAATTTCAACATCAGATACTACTACTAAACAACAGGAAGAAAATCTTCGCTCACCCATTTGTTGTATTATGGGCCACGTTGACACTGGTAAAACCAAACTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACGCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGATGGTTCCTGGCTTGCTTGTTATTGATACCCCTGGGCACGAATCATTTACAAATTTGCGTTCTCGTGGTTCGGGTTTATGTGACCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTAAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATACTGAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAAGGATTGAATACCGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTTCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAACGGTGTACTGCATGAAGGAGATCAAATAGTTGGCCCAATTGTTACTACTATTCGAGCCCTATTGACCCCCCATCCAATGAAGGAGCTCCGAGTGAAGGTAGGAAACAATGTAATTCAAAGCGAGGAATTTCCAGTTTGGTTAGCATGGGCGATTCTAGCTGGAGGGGGAAGGTTGGTGGTTGGTAGAGGGAATGTGGTCATTGAATTTTATCTGCCTGGATATTTCCGAGAATTGTCACTAGAATGGCTTAGATTTTGTTTGGCCTTCACTAGAATGGCTGAAGTCCTATCTGGCCTCTATGAATATGCAATCCTTGACGAGACACTATTAAAATTTATATGCAAGTGTTGCATTGAACAGCTGATGATGTTGTGTAATTTTCAGGGAACGTATCTGCATCATAAAGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGAAAGTAATGTCAGGATTCAGCTTTCTTACATCCCAGCTGGCCAGCTTCATTGAAGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAGTCAGTAATGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGAGTCCGGCTGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGCGTAATGCTTGAAAAGAAAAAGGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATCTATCACTTGTTCGACCAGTTCAAGGCCTACATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCTAACTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTAATTGATGGCATTGCCAAGTTTCTCATGTACTGGCCCTGTTTGAGCCCTCATTGTCTCATGATAGCTCGTACTCTTTCCCTAAGACTTTATCTATACCCCTCTAGGGTTGGCACACCAATCTGTATTCCTCAACGAGAATTTATTGAGATTGGTCGCATCGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAGATTGCCATTAAGGTAACCCCTTTTGTTATTTTACTGATTGTTGGGCACTCTTCGGAGGAACAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGATGATTTGTCCACGGAGGAGTGGAGACTGGTGGTGAAATTGAAGAACCTTTTCAAGATACAATGA 4650 41.63 MGRKKPTARDDDSAPAAAQGGGKSKKKTFAVDDDEYSIGTELSEEAPVQEEKVVITGKKKGKKGNSKVSQVKGDDDEDEDVDSVSEIVITGKKKGKSKKGGSSSAFSASSFGLLEEEGEDGADNDDESVLTAEKDDDEGDDSEIKFSGKKSSSKSSKKSGFSAVSAFSALDDEEDEDVIDNENKVDEGIDDEPVIAFTGKKKSSKGAKKAVNAFSGFSGLDYQDEDRDADKVEDEDVTTISFSGKKKKSAKGSKKSGNSVSVAFADEDNDGDVSISEPNKLQNDGVDEDDDNVIAFSGKKKSSKKKSSSSFVTLSDENPLGNDVKDVFVPEVLNSASTSFASDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKLADPPLSSQEAKVENPPDLVTPPDASAEKEAEEESTETAAARKKKKKKEKEKEKKAAAAAAAAAEGKDEKIEEVKTEIIEPKKGAAKSKVPDKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASSGGLPLSASDPSAPTKRPKYQTKKSKPAHHQTNGSAQTKVMEHTEEKIQEKDVADSEILESEKIEPVESMHVEEKSDIIEVSEDNEIKKEDEDEDEDEDEWDAKSWDDAVVDLSLKSSFADEELDSETENGMKKDGKNGAQTSRDAGFFFVRSFYCCLLVHSEIIFPHFTSTSHKSSESISSIPLLPKGAKPIAPAQKSLPSQPIRYQDIENRKNQPEVEVVDKGKRKDDAVKKKISTSDTTTKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLMVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKVGNNVIQSEEFPVWLAWAILAGGGRLVVGRGNVVIEFYLPGYFRELSLEWLRFCLAFTRMAEVLSGLYEYAILDETLLKFICKCCIEQLMMLCNFQGTYLHHKEIKAAQGIKITGQKVMSGFSFLTSQLASFIEGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIDGIAKFLMYWPCLSPHCLMIARTLSLRLYLYPSRVGTPICIPQREFIEIGRIASIENNHKPVDYAKKGQKIAIKVTPFVILLIVGHSSEEQQKMYGRHFDLEDELDDLSTEEWRLVVKLKNLFKIQ 1549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8244410 8261004 - CmoCh01G010460.1 Cmo01g01046 374529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 578 596 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 1 323 - -
Cmo01g01046 1549 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 828 1044 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 338 352 - -
Cmo01g01046 1549 TIGRFAM small_GTP: small GTP-binding protein domain 833 958 IPR005225 GO:0005525
Cmo01g01046 1549 Gene3D Translation factors 1192 1278 - -
Cmo01g01046 1549 Gene3D Translation factors 1392 1549 - -
Cmo01g01046 1549 Coils Coil 1374 1394 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 795 819 - -
Cmo01g01046 1549 Coils Coil 486 553 - -
Cmo01g01046 1549 Gene3D Translation factors 1050 1119 - -
Cmo01g01046 1549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1108 IPR027417 -
Cmo01g01046 1549 Coils Coil 422 458 - -
Cmo01g01046 1549 SUPERFAMILY Translation proteins 1457 1535 IPR009000 -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 416 435 - -
Cmo01g01046 1549 CDD IF2_eIF5B 831 1041 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 664 683 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 618 663 - -
Cmo01g01046 1549 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1262 1391 IPR036925 -
Cmo01g01046 1549 PANTHER PHOTOSYSTEM II PROTEIN D1 764 1108 - -
Cmo01g01046 1549 PANTHER PHOTOSYSTEM II PROTEIN D1 1456 1549 - -
Cmo01g01046 1549 PANTHER PHOTOSYSTEM II PROTEIN D1 1182 1428 - -
Cmo01g01046 1549 Gene3D - 1279 1385 IPR036925 -
Cmo01g01046 1549 Pfam Translation-initiation factor 2 1266 1378 IPR023115 -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 338 718 - -
Cmo01g01046 1549 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 764 1108 IPR015760 -
Cmo01g01046 1549 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 721 IPR015760 -
Cmo01g01046 1549 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1456 1549 IPR015760 -
Cmo01g01046 1549 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1182 1428 IPR015760 -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 795 823 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 456 570 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 116 140 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 282 298 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 366 381 - -
Cmo01g01046 1549 Gene3D - 821 1049 IPR027417 -
Cmo01g01046 1549 PANTHER PHOTOSYSTEM II PROTEIN D1 1 721 - -
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 169 187 - -
Cmo01g01046 1549 Pfam Elongation factor Tu GTP binding domain 832 1040 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 PRINTS GTP-binding elongation factor signature 912 923 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 PRINTS GTP-binding elongation factor signature 832 845 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 PRINTS GTP-binding elongation factor signature 896 906 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 PRINTS GTP-binding elongation factor signature 948 957 IPR000795 GO:0003924|GO:0005525
Cmo01g01046 1549 MobiDBLite consensus disorder prediction 696 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01046 Cmo-Chr1:8244410 Cmo08g00451 Cmo-Chr8:2783368 3.91E-23 dispersed
Cmo01g01046 Cmo-Chr1:8244410 Cmo09g01088 Cmo-Chr9:5960986 9.28E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01046 K03243 - zju:107427478 931.784