Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01050 ATGGATCACGCGGCGGATGCTCAGAGAACGGACTTGATGACCATCACTCGATTTGTGTTGAATGAGCAATCCAAGTACCCGGAATCGCGAGGGGATTTCACCATTTTGCTTAGTCATATCGTTCTTGGCTGCAAATTCGTCTGCTCTGCTGTTAACAAGGCAGGTTTAGCTAAACTTATTGGACTTGCTGGTGAGACCAATGTTCAGGGCGAAGAGCAAAAGAAACTGGATGTGCTCTCAAATGAAGTTTTTATTAAGGCTTTGGTCAGCAGTGGCAGAACTTGTATCCTTGTTTCTGAAGAAGATGAAGAGCCAACTTATGTCGAGCCATCTCGGCGTGGAAGGTATTCTGTTGTGTTTGATCCGCTTGATGGATCCTCCAACATTGACTGTGGCGTTTCGATTGGAACGATTTTCGGAATCTATCACTTGAACGATAGCCATGAACCTAACCTGGAAGACGTCCTTCAACCAGGAAAGAATATGGTTGCAGCAGGCTATTGCTTGTATGGCAGCTCTTGCACACTCGTTTTAAGTACTGGAACTGGTGTTAATGGATTCACTCTTGACCCTTCTCTTGGGGAGTTCATTTTAACCCACCCAGACCTTAAGGTTCCAAAGAAAGGAAAGATATATTCAGTGAATGAAGGAAATGCTAAGAACTGGGATGGTCCGACCGCAAAGTATGTAGAGAATTGCAAGTTTCCTACAGATGGATCACCCCCAAAGTCTCTGAGATACGTTGGAAGCATGGTTGCTGATGTGCATCGTACATTGCTTTATGGTGGTATCTTTTTGTACCCTGGTGACAAGAAGAGCCCTAACGGAAAACTGCGTGTGTTGTATGAAGTTTTTCCAATGGCGTTCTTGATGGAGGAAGCAGGAGGTCAAGCATTCACTGGCAAAATAAGGGCACTTGAGTTAGTTCCAAAGACGATACATGAGAGATCTCCCATATTTCTTGGTAGCTATGATGATGTTGAAGAGATCAAAGCTCTTTATGCTGCTGCTGCTGCTGCTGAGAATAAATGA 1032 44.38 MDHAADAQRTDLMTITRFVLNEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFIKALVSSGRTCILVSEEDEEPTYVEPSRRGRYSVVFDPLDGSSNIDCGVSIGTIFGIYHLNDSHEPNLEDVLQPGKNMVAAGYCLYGSSCTLVLSTGTGVNGFTLDPSLGEFILTHPDLKVPKKGKIYSVNEGNAKNWDGPTAKYVENCKFPTDGSPPKSLRYVGSMVADVHRTLLYGGIFLYPGDKKSPNGKLRVLYEVFPMAFLMEEAGGQAFTGKIRALELVPKTIHERSPIFLGSYDDVEEIKALYAAAAAAENK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8287073 8290888 + CmoCh01G010500.1 Cmo01g01050 374533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01050 343 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 2 337 IPR000146 GO:0005975|GO:0016791
Cmo01g01050 343 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 201 IPR033391 -
Cmo01g01050 343 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 2 337 - -
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 212 239 IPR028343 GO:0042132
Cmo01g01050 343 PRINTS Fructose-1,6-bisphosphatase signature 310 335 IPR028343 GO:0042132
Cmo01g01050 343 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 205 334 IPR044015 -
Cmo01g01050 343 Gene3D - 4 203 - -
Cmo01g01050 343 PIRSF FBPtase_SBPase 9 339 IPR000146 GO:0005975|GO:0016791
Cmo01g01050 343 PIRSF FBPtase 9 339 IPR028343 GO:0042132
Cmo01g01050 343 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 336 IPR000146 GO:0005975|GO:0016791
Cmo01g01050 343 Gene3D - 204 343 - -
Cmo01g01050 343 ProSitePatterns Fructose-1-6-bisphosphatase active site. 276 288 IPR020548 GO:0005975|GO:0042578
Cmo01g01050 343 SUPERFAMILY Carbohydrate phosphatase 8 334 - -
Cmo01g01050 343 CDD FBPase 20 334 IPR000146 GO:0005975|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01050 K03841 FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11] - csv:101205576 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01050 Cmo-Chr1:8287073 Cmo07g01081 Cmo-Chr7:5614296 4.55E-114 dispersed
Cmo01g01050 Cmo-Chr1:8287073 Cmo09g01087 Cmo-Chr9:5941827 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1386 Blo01g01724 . . . . . . Bma01g02503 . . . . Car01g00893 . . Cpe06g00880 . . . . . . . . Cla08g00367 Cam08g0791 Cec08g0351 Cco08g0459 Clacu08g0504 . Cre08g0333 . . . Cone20ag0383 . . . . . . Bda11g00878 . . . . . . Cmo01g01050 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008203 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01050 Cmo_Chr01 FPKM 3.512102 4.531496 3.555743 3.267054 2.842077 3.387728 3.379279 11.071615 9.923541 11.844187