Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01051 ATGGATGTCGTCGACTCTGGCGTTGCGGTGGCGCCACCCCCGGAAGCTGTAGAACCGAATGAAGTTGGCGGCGGGTCGAATTCCGGTGAAGAAGATAAGGGGTTGATGTTGTTTGAAGATGGAGAGAAGAATTTTGGTGGAAACCGGTGGCCTCGACAAGAAACCTTGGCTTTGTTGAAGATAAGATCCGACATGGATGCAATTTTCAGAGATGCAACGCTCAAAGCTCCATTATGGGATGAAATTTCAAGGAAATTGGGCGAGCTTGGATTCAATCGAACACCAAAAAAATGCAAGGAGAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAATTGGTCGATGTGGGAAATCTGATAATAGCAAAAAGGTTTATAAATTCTCCGATGAATTAGAGGCTTTTGATATTCATCATCACAACCACATTTCCGTTCAATCCCACCATCGCCACTCAATTCCGCCGCCAAAACTAATCGCACCTTCTACTGTTTCATCGACCATCGACAACTCTTTGCCACTCAATTTTCAAAACATATCTGCCAATGGGTTGTTTTTGAGCTCGACATCGTCGTCAACCGCGTCGGAGGAAGATAAAGATACGTTTCGTAAGACGAAGAAGAGAAAGTGGAGAGATTTCTTCGTGAACTTAACAAAAGAAGTGATAGAGAAGCAAGAGAGCCTTCAATTAAAATTCCTAGAATCCTTGGAGAGAATAGAGAATCAAAGAAAATTGAGAGATGAAGCATGGAGAATGAAGGAAATGACAAGGGTTAATCAAGAACATCAAGTTTTAGTTCAAGAGACGTCAATCACCGCTGCGAAAGACGCCGCCGTCATCGCGTTTTTGCAAAAAGTATCTCCCTCAACACCACCGGTACCACATAACGCTATTGCAAAGGTGAGCACGGGTAGAGGAAGTGAGTCGAGATGGCCGAAGGCGGAAGTGGAAGCGTTAATAAGATTGAGGATGGAAATGGAGATGAAGTATGAAGAGAATGGGCAAAAGGGGTTATTATGGGAAGAGATATCAGGAGGGATGAGAGGGATTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATGGGAAGAAGAAGAGGGGAGAAGACTCCAAGACATGTCCCTACTTTCACTTGTTGGATGCTTTATACAAAGAGAAAGAGAAGCAGGCGAGTTTTGATATGAATGCCCAAATGGAGGCATTGGTGGTGGAGCCAGAGCAGCAATGGCCACCTCCATTTCAGGCCAATCATCAAGTGTTGCATACAATAAAGGGTGAGGAGGGAAAGGAAGAAGAAGAAGATAGTGGAAGTAGCAGCACAGATGTGGAGGATTGA 1380 43.41 MDVVDSGVAVAPPPEAVEPNEVGGGSNSGEEDKGLMLFEDGEKNFGGNRWPRQETLALLKIRSDMDAIFRDATLKAPLWDEISRKLGELGFNRTPKKCKEKFENVYKYHKRTKIGRCGKSDNSKKVYKFSDELEAFDIHHHNHISVQSHHRHSIPPPKLIAPSTVSSTIDNSLPLNFQNISANGLFLSSTSSSTASEEDKDTFRKTKKRKWRDFFVNLTKEVIEKQESLQLKFLESLERIENQRKLRDEAWRMKEMTRVNQEHQVLVQETSITAAKDAAVIAFLQKVSPSTPPVPHNAIAKVSTGRGSESRWPKAEVEALIRLRMEMEMKYEENGQKGLLWEEISGGMRGIGYNRSSKRCKEKWENINKYFKKVKDGKKKRGEDSKTCPYFHLLDALYKEKEKQASFDMNAQMEALVVEPEQQWPPPFQANHQVLHTIKGEEGKEEEEDSGSSSTDVED 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8293827 8295664 + CmoCh01G010510.1 Cmo01g01051 374534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01051 459 MobiDBLite consensus disorder prediction 435 459 - -
Cmo01g01051 459 CDD GT1 48 113 - -
Cmo01g01051 459 ProSiteProfiles Myb-like domain profile. 42 106 IPR001005 -
Cmo01g01051 459 MobiDBLite consensus disorder prediction 1 31 - -
Cmo01g01051 459 ProSiteProfiles Myb-like domain profile. 304 368 IPR001005 -
Cmo01g01051 459 CDD GT1 310 371 - -
Cmo01g01051 459 Gene3D - 50 111 - -
Cmo01g01051 459 Gene3D - 312 373 - -
Cmo01g01051 459 PANTHER - 22 150 - -
Cmo01g01051 459 PANTHER - 167 456 - -
Cmo01g01051 459 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 167 456 - -
Cmo01g01051 459 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 22 150 - -
Cmo01g01051 459 SMART sant 308 370 IPR001005 -
Cmo01g01051 459 SMART sant 46 108 IPR001005 -
Cmo01g01051 459 Pfam Myb/SANT-like DNA-binding domain 310 397 IPR044822 -
Cmo01g01051 459 Pfam Myb/SANT-like DNA-binding domain 48 129 IPR044822 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01051 - - - csv:101207491 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01051 Cmo-Chr1:8293827 Cmo09g01086 Cmo-Chr9:5930480 5.06E-177 dispersed
Cmo01g01051 Cmo-Chr1:8293827 Cmo01g01052 Cmo-Chr1:8334382 1.81E-117 tandem
Cmo01g01051 Cmo-Chr1:8293827 Cmo09g01085 Cmo-Chr9:5914416 2.89E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1381 Blo01g01727 Blo12g00788 . Bda03g00390 Bpe02g00215 Bpe04g00350 Bma04g00367 Bma01g02505 . . . . . . . . . . . . . . . . Cla08g00363 Cam08g0789 Cec08g0349 Cco08g0454 Clacu08g0501 . Cre08g0330 Cone4ag1502 Cone7ag1446 . . . . . . . . Bda11g00876 . . . . . . Cmo01g01051 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001179 3 2 4 4 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 0 2 2 2 2 5 2 0 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9084 PF13837 Myb_DNA-bind_4 3.50E-20 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01051 Cmo_Chr01 FPKM 1.466296 1.281025 1.631854 1.704747 3.537187 3.448864 3.59744 0.597718 0.804425 0.673571