Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01052 ATGCTTGGGGACTCCACGACTTCCGTCTTGGGCGGCGGCGCCGGAGAAGACTCTGCCGTACCGGAGACGACAAATCAGCAAGATGGGCTGATGGACGATGTGGGTGAGAGCGGGGCAGTGACGGCGGAGGATAATAATAAGACTTGTGGTGAAGATGAGAGAGGGAGAAGTGGCGAAGGAGACAACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTGGCGCTGTTGAAAATACGGTCGGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGTCGAGTTGTAGTTAAATTGTTTAGAGAACAAAATATCATCAAATTTGAAGCTGAAATTTCTGTTGATTTTTTCATCAATTTTTTCTTCCGAATCTCTTCTGTTTTTCTTTTACCTCAATCATTGTTTTTACACATGCAATTGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAAAGAACCAAAGAAGTCCGATGTGGGAAACCAGATAGTAAAAGTTACAAGTTTTTTGAACAATTAGAAGCTCTTGAAAATCACCCTCCTCTCAATTTCCACTCCCATTTGTCTAAGCCTCCACCTCCGGCAACGGCGGCTTCACCTCCAACCACCGTTATTTCTCACATTCCTTCAACTGTTCCATCGACCACCACCGCCGTACCCCACTTGATGAACATATCATTCACTCAACCAAACCCCACAATTCACCTCCAATCCATGCCCCCTCCGCCTCCCTTGCCATTCAATAACCCTACCAGTTTAGCTACCACCATTGCTCCGCTTTTTCAAACCAATGTCTCATCTGGGGCAGCTGGACTGGGGTTCGAAGCGGATCTCATCTCGAACTCATCATCTGATGATGTCGACTCGTCGACATCATCCGACGAGGCGTCGAGACAGAGAAAGAAGAGGAAATGGAAGGATTTCTTTGAGAGATTGATGAGGGAAGTGATTGAAAGGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAAAGGGAGCAAGAAAGAGTTGTAAGAGAAGAAGCATGGAGGATGCAAGAAATGGCCAAAATCAATAGAGAGAAAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCTAAAGATGCCGCTATTACATCCTTCCTCCAAAAACTAACACAATCCCACCACAATAACGACAACCCATCACCGCCACCACCGCCGCCGCCACCACCACGACAACAACCAATCTCAATATCAAATCCGACACCAGTCGTGCAACCACCGCCGCAACAAGCTTCTACATTGCAAGTTGTTCATCCAAATTCTACCCCACAAAAATTGGTGAACAACAATGAATATTTGCAAATGGAGATTGTGAAAAGAAGTGATAATGGTGGTGAAAGTTATAGGATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTGGAAGCACTCATCAAATTGAGAACAAATCTAGACGCCAAATATCAAGAAAATGGACCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCCATGAAGAGACTTGGGTATAATAGAAATGCAAAGAGGTGCAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTAAAGGAGAGTAAAAAAACAAGGCCGGAGGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAAAAGAACATCAACAACAACAACGGCAACAAGTTCGACAATGTCATAATCGGATCATCGACACAGATTATGCCACATCAACAGCAACCATTGATGGTTCGACCAGAGCAACAATGGCCTCCGCAACAAGAACTCGTTCGATCCAACTCAGCCAACAAAGATATGGAGAGCGAACCAATGGATCGAGACGAAAAGGATGAAGACGATGACGAAGATGATGACGAAGAAGAAGACGAGGAAGGTGGAGAGAACTACGAGATTGTGGCAAGCAAGCCAGCTTCGATGAGTGTTGCAGAGTGA 2052 44.93 MLGDSTTSVLGGGAGEDSAVPETTNQQDGLMDDVGESGAVTAEDNNKTCGEDERGRSGEGDNGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSSRVVVKLFREQNIIKFEAEISVDFFINFFFRISSVFLLPQSLFLHMQLKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRCGKPDSKSYKFFEQLEALENHPPLNFHSHLSKPPPPATAASPPTTVISHIPSTVPSTTTAVPHLMNISFTQPNPTIHLQSMPPPPPLPFNNPTSLATTIAPLFQTNVSSGAAGLGFEADLISNSSSDDVDSSTSSDEASRQRKKRKWKDFFERLMREVIERQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREKEILAQERSMAAAKDAAITSFLQKLTQSHHNNDNPSPPPPPPPPPRQQPISISNPTPVVQPPPQQASTLQVVHPNSTPQKLVNNNEYLQMEIVKRSDNGGESYRMSPASSSSRWPKVEVEALIKLRTNLDAKYQENGPKGPLWEEISSAMKRLGYNRNAKRCKEKWENINKYFKKVKESKKTRPEDSKTCPYFHQLDALYKEKNINNNNGNKFDNVIIGSSTQIMPHQQQPLMVRPEQQWPPQQELVRSNSANKDMESEPMDRDEKDEDDDEDDDEEEDEEGGENYEIVASKPASMSVAE 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8334382 8337499 - CmoCh01G010520.1 Cmo01g01052 374535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01052 683 MobiDBLite consensus disorder prediction 645 667 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 257 278 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 46 61 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 410 468 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 262 276 - -
Cmo01g01052 683 Gene3D - 72 180 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 308 330 - -
Cmo01g01052 683 Gene3D - 497 558 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 620 683 - -
Cmo01g01052 683 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 153 675 - -
Cmo01g01052 683 SMART sant 68 177 IPR001005 -
Cmo01g01052 683 SMART sant 493 555 IPR001005 -
Cmo01g01052 683 CDD GT1 495 560 - -
Cmo01g01052 683 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 22 107 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 212 236 - -
Cmo01g01052 683 CDD GT1 70 182 - -
Cmo01g01052 683 ProSiteProfiles Myb-like domain profile. 489 553 IPR001005 -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 446 468 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 416 445 - -
Cmo01g01052 683 Coils Coil 344 364 - -
Cmo01g01052 683 Pfam Myb/SANT-like DNA-binding domain 147 203 IPR044822 -
Cmo01g01052 683 Pfam Myb/SANT-like DNA-binding domain 495 582 IPR044822 -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 620 637 - -
Cmo01g01052 683 MobiDBLite consensus disorder prediction 1 71 - -
Cmo01g01052 683 PANTHER - 153 675 - -
Cmo01g01052 683 PANTHER - 22 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01052 - - - cpep:111787713 875.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01052 Cmo-Chr1:8334382 Cmo09g01085 Cmo-Chr9:5914416 0 dispersed
Cmo01g01051 Cmo-Chr1:8293827 Cmo01g01052 Cmo-Chr1:8334382 1.81E-117 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1332 . . . . . . . . . . . . Car01g00858 . . . . . . . . . . . . . . . . . . . . . Cone20ag0360 . . . Cme03g00894 . . . . . . . . . Cmo01g01052 . . . . Car09g01083 . . . . . . . . . . . . . . . . . . Chy03g00281 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001179 3 2 4 4 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 0 2 2 2 2 5 2 0 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9085 PF13837 Myb_DNA-bind_4 1.50E-21 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01052 Cmo_Chr01 FPKM 14.87443 16.439198 6.866278 6.212239 3.998969 4.193869 4.460371 9.54001 9.246325 10.796647