Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01055 ATGGGGTTTCTTAGCTGCTGGTTCTATTGTCTAGGTATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCGAGGCGTAGTTTTGAGTTCAGACTGCCTGGTCACCATAGAGGTAAATCTCATGGATCAGTCCATGATCTGCTCGATCAACCTCTGGTAATTCAGACTAGTCGATGGGCTAGCCTTCCACCTGAGCTATTGCGGGATGTTGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGATATGTGCAAAGAGATCGTAAAAACTCCCGAGTTCTCTGGGAAAATTACGTTCCCTGTCTCCTTAAAGCAGGTACAAAAGCAACAAAATGTTCCCGGGACGCGTGATGGAACGATGCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTACTGCTTCTGGGTATTCGACTCTGAATATGTATAAATATACGTATGTAGTCACGGATATGTTTCTAAATAATGATACTCTTGCAGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCGAAAAGAACAAGGAGAGCGACTTGCACTGAGTACGTGATTTCCATGGATGCGGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTAAGTTCCTTATTTCTTGAAGATACCGTTAATCGCAACACGCCTTTCCTAAAACTATATGCCATGCTGAATGCTTATCAGTTTACACTTCATATGGATCGTGTTCAAATCGGGAAGTCGAGAACTTGTGGTTCTAATATTGAACGTCATAAGCCTGTAGCCATTCGCCACGTGGTTTTTAGTTTTCGACTTCTAAAATTGTTCATAAAAAAGTACAAGAAGCACTTGTTTTTTAGATTTCGTCGAGTTATTCTGATTCAGTTCTTGAAGCGTTTTCTTGTGGTCCGTTCTCTTCATTTCAGGTCTAATTTTCTAGGGACCAAATTTATTATCTATGATACACAGCCTCCATACAACAATGCCCAGATTTCCCCACCAGGCCATAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGATCCCATCCGGTAGCTATAATATTGCTCAAATCTCCTATGAGCTGAACGTTCTTGGCACTCGAGGCCCCCGAAAGATGCACTGCACAATGCACTCCATCCCCGTCTCATGTCTTGAGCCCGGTGGCAGTGTTCCTGGCCAGCCCCAAGTTGTCACTCGACTCCTTGGTGATTCGTTTCGAAGTATATCGTTTTCGAAGTCTGCATTAAATTCTACAGAGTTCAGTAGTTCCCGCTTCTCTGATATCGTTGGTTCACGGGATGAAGATGAAGCGGGGAAGGAGAGGCCATTGATTCTTAGGAACAAGCCACCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCAGGGGACGAGTAACCGTTGCGTCTGTCAAAAACTTCCAACTGATCGCTGCAACAGAGGCTTCTTCTTCTACAGCTACAAACCAACACGCTCAATCTTCCCAGTCCGACCACGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACAATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTCGCCATCTGTTTGAGTAGTTTCGACACCAAGTTGGCTTGTGAATAA 1701 44.03 MGFLSCWFYCLGIVRDVREGFGSLSRRSFEFRLPGHHRGKSHGSVHDLLDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWRDMCKEIVKTPEFSGKITFPVSLKQVQKQQNVPGTRDGTMQCFIKRDKSNLTYHLYLCLSTASGYSTLNMYKYTYVVTDMFLNNDTLAALLVDNGKFLLSAKRTRRATCTEYVISMDADNISRSSNTYIGKLSSLFLEDTVNRNTPFLKLYAMLNAYQFTLHMDRVQIGKSRTCGSNIERHKPVAIRHVVFSFRLLKLFIKKYKKHLFFRFRRVILIQFLKRFLVVRSLHFRSNFLGTKFIIYDTQPPYNNAQISPPGHSRRFYSKKVSPKIPSGSYNIAQISYELNVLGTRGPRKMHCTMHSIPVSCLEPGGSVPGQPQVVTRLLGDSFRSISFSKSALNSTEFSSSRFSDIVGSRDEDEAGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEASSSTATNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8461994 8465038 + CmoCh01G010550.1 Cmo01g01055 374538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01055 566 Gene3D - 55 107 - -
Cmo01g01055 566 Pfam Tub family 329 561 IPR000007 -
Cmo01g01055 566 Pfam Tub family 131 236 IPR000007 -
Cmo01g01055 566 SUPERFAMILY Tubby C-terminal domain-like 123 235 IPR025659 -
Cmo01g01055 566 SUPERFAMILY F-box domain 56 103 IPR036047 GO:0005515
Cmo01g01055 566 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 188 236 - -
Cmo01g01055 566 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 329 566 - -
Cmo01g01055 566 ProSitePatterns Tub family signature 2. 551 566 IPR018066 -
Cmo01g01055 566 Pfam F-box domain 60 107 IPR001810 GO:0005515
Cmo01g01055 566 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 12 161 - -
Cmo01g01055 566 SUPERFAMILY Tubby C-terminal domain-like 327 566 IPR025659 -
Cmo01g01055 566 Gene3D Tubby Protein; Chain A 328 566 IPR025659 -
Cmo01g01055 566 Gene3D Tubby Protein; Chain A 127 242 IPR025659 -
Cmo01g01055 566 PANTHER TUBBY-RELATED 188 236 - -
Cmo01g01055 566 PANTHER TUBBY-RELATED 12 161 - -
Cmo01g01055 566 PANTHER TUBBY-RELATED 329 566 - -
Cmo01g01055 566 ProSitePatterns Tub family signature 1. 486 499 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01055 Cmo-Chr1:8461994 Cmo04g02565 Cmo-Chr4:18784932 4.34E-96 dispersed
Cmo01g01055 Cmo-Chr1:8461994 Cmo15g00602 Cmo-Chr15:2928155 1.56E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9087 PF01167 Tub 4.10E-83 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01055 K19600 - csv:101206041 437.958