Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01057 ATGGAAGAAACGCAGGTGGTGATCGTGGGCGGTGGTCCGGCGGGGCTTGCAACGGCAGCATGCCTCAACCGTCTTTCGATACATAACATCGTACTCGAAAGAGACGATTGCTGCGCTTCTCTATGGCGAAAAAGGGCTTATGACAGGTTGAAGCTTCATTTAGCCAAACCCTATTGTCAACTTCCTTACATGCCATTCCCACACAATGCACCAACCTACATTTCTCGGTTGGATTTCATTGCTTATTTGGATAACTACATGTCGTGTTTCGGGATTGAACCGCGGTGTTGTCGGAGCGTGGAACGAGCTTGGTACGACAAGGTGGAGGGGAAGTGGATGGTGGTGGTGAATAACAAGGGTAGTGGTGTGGAAGAGAGGTATGTTTGTAGGTATCTCGTGGCTGCCACTGGGGAGAATAGTGAGGGGTTTTTGCCGGATGTTCCTGGATTGAAGAGCTTCCATGGTGAGGTATTGCATTCAAGTGGGTATGAGAATGGAGAGAGGTTTAGAGGTAAGGATGTTTTGGTTGTTGGATGTGGGAATTCTGGCATGGAGATTGCTTATGATTTGTCTAATTATGCTGCAAATACTTCCATCGTCGTTCGGAGCCCGGTCCACGTGTTAACGAAAGACATCGTTCGGGTAGGGATGTTTTTATTGAGGTATCTTCCATGCAAGGTTGTGGATCCAATCTGCATTAATCTTGCGAAGATGAAGTATGGAAATTCATCCAAGTATGGGATTCGTAGGCCAAAAGGAGGCCCTTTTCTTATCAAAGCCAAAACTGGTCGTTCCCCCACCATTGATGTTGGATGCATGAATAGAATCAAGAAAGGAGAGATCAAGGTTCTTCCATCGATCACATGCATAAACGAAGACCATGTGAGGTTTGCATACGGCATTGTGAATTACTTCGATGCGATAATTTTTGCGACGGGGTACAAGAGCACAGTGCTGAATTGGCTGGAGGATGAGAAGGGGCAGTTCAATGAGGAAGATGGGTTTCCAAAGCAAAGGCCCCCAAATCATTGGAAGGGAGAAGATGGGTTGTACTGTGCAGGATTTGGAAAGCAAGGGTTGCTTGGGATTTCAAATGATGCGCAGAACATCGCAAGGGACATAGCAACCTTGGCAGCTTGA 1140 47.02 MEETQVVIVGGGPAGLATAACLNRLSIHNIVLERDDCCASLWRKRAYDRLKLHLAKPYCQLPYMPFPHNAPTYISRLDFIAYLDNYMSCFGIEPRCCRSVERAWYDKVEGKWMVVVNNKGSGVEERYVCRYLVAATGENSEGFLPDVPGLKSFHGEVLHSSGYENGERFRGKDVLVVGCGNSGMEIAYDLSNYAANTSIVVRSPVHVLTKDIVRVGMFLLRYLPCKVVDPICINLAKMKYGNSSKYGIRRPKGGPFLIKAKTGRSPTIDVGCMNRIKKGEIKVLPSITCINEDHVRFAYGIVNYFDAIIFATGYKSTVLNWLEDEKGQFNEEDGFPKQRPPNHWKGEDGLYCAGFGKQGLLGISNDAQNIARDIATLAA 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8495265 8496792 - CmoCh01G010570.1 Cmo01g01057 374540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01057 379 Gene3D - 1 378 IPR036188 -
Cmo01g01057 379 SUPERFAMILY FAD/NAD(P)-binding domain 2 207 IPR036188 -
Cmo01g01057 379 PRINTS Pyridine nucleotide disulphide reductase class-II signature 5 27 - -
Cmo01g01057 379 PRINTS Pyridine nucleotide disulphide reductase class-II signature 169 193 - -
Cmo01g01057 379 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA11-RELATED 2 377 - -
Cmo01g01057 379 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 2 377 - -
Cmo01g01057 379 Pfam Flavin-binding monooxygenase-like 5 316 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmo01g01057 379 PRINTS FAD-dependent pyridine nucleotide reductase signature 6 25 - -
Cmo01g01057 379 PRINTS FAD-dependent pyridine nucleotide reductase signature 173 191 - -
Cmo01g01057 379 SUPERFAMILY FAD/NAD(P)-binding domain 170 360 IPR036188 -
Cmo01g01057 379 PIRSF FMO 2 335 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01057 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101222184 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01057 Cmo-Chr1:8495265 Cmo20g01071 Cmo-Chr20:9916060 8.89E-143 dispersed
Cmo17g01106 Cmo-Chr17:9089738 Cmo01g01057 Cmo-Chr1:8495265 5.87E-91 dispersed
Cmo01g01057 Cmo-Chr1:8495265 Cmo19g00150 Cmo-Chr19:852910 5.92E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1183 . . . Bda03g00026 . . Bma04g00024 . . . Cma01g01015 . Car01g00896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01057 . . . . . . . . . . . . . . . . . . . . . . . Chy03g00810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002100 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 3 2 3 3 2 2 3 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01057 Cmo_Chr01 FPKM 7.021667 5.345572 4.663465 3.545403 8.09619 8.92299 5.555075 2.914452 3.506671 3.845307