Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01058 ATGAGGCTTTTTCCTTCCCTCTCTACTCACTCAGTTTTTACTTTCCCTTTCCCTTTTCCTGTACTGGATTTGCTTTTTTCAAGGTGGTTTTTTTCTGTGTTTCTGATGTCGTCGGCACCGTCTTCGAGTCAACCGGAGTTTGATTACTTGTTTAAGTTGCTGTTGATTGGGGACTCTGGAGTTGGGAAGAGTACGCTTCTTTTGCGATTCACTTCTGATTCATTTGAGGAACTTTCTCCAACTATTGGTGTGGATTTCAAGATTAAGCATGTTACAGTTGGGGGAAAGAAGTTGAAGCTTGCAATATGGGACACAGCTGGGCAGGAGAGGTTTCGAACATTAACAGGTTCATATTACAGAGGCGCTCAAGGAATCATTATGGTGTATGATGTGACCCGCCGTGAGACATTCACAAATCTCTCTGACATATGGGCTAAAGAAATTGACCTGTACTCAACAAATCAGGATTGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAAAGTGAAAGGGTAGTCAGTAAAAAAGAGGGAATCGACTTTGCTCGAGAATATGGATGCCTATTTCTTGAATGTAGCGCAAAAACTCGAGTCAATGTGGAACAATGCTTTGATGAGCTTGTGTTAAAGATTTTGGACACGCCCAGTCTTTTGGCTGATGGCTCAACAGGTTTGAAAAAGAACATCTTCAAAGAGAAACCTCCTCAAGAGAATGCTTCAGCCGGTGGCTGCTGCTCGTATTGA 747 42.44 MRLFPSLSTHSVFTFPFPFPVLDLLFSRWFFSVFLMSSAPSSSQPEFDYLFKLLLIGDSGVGKSTLLLRFTSDSFEELSPTIGVDFKIKHVTVGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFDELVLKILDTPSLLADGSTGLKKNIFKEKPPQENASAGGCCSY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8497567 8504693 + CmoCh01G010580.1 Cmo01g01058 374541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01058 248 Pfam Ras family 52 213 IPR001806 GO:0003924|GO:0005525
Cmo01g01058 248 SMART ras_sub_4 48 215 - -
Cmo01g01058 248 ProSiteProfiles small GTPase Rho family profile. 44 213 - -
Cmo01g01058 248 SMART ran_sub_2 56 248 - -
Cmo01g01058 248 ProSiteProfiles small GTPase Ras family profile. 43 248 IPR001806 GO:0003924|GO:0005525
Cmo01g01058 248 PANTHER BNAA05G18680D PROTEIN 42 247 - -
Cmo01g01058 248 SMART rho_sub_3 53 215 IPR001806 GO:0003924|GO:0005525
Cmo01g01058 248 CDD Rab18 51 212 - -
Cmo01g01058 248 SMART rab_sub_5 51 215 - -
Cmo01g01058 248 SMART arf_sub_2 39 216 - -
Cmo01g01058 248 PANTHER LD21953P-RELATED 42 247 - -
Cmo01g01058 248 ProSiteProfiles small GTPase Rab1 family profile. 46 246 - -
Cmo01g01058 248 PRINTS Transforming protein P21 ras signature 190 212 - -
Cmo01g01058 248 PRINTS Transforming protein P21 ras signature 91 113 - -
Cmo01g01058 248 PRINTS Transforming protein P21 ras signature 73 89 - -
Cmo01g01058 248 PRINTS Transforming protein P21 ras signature 51 72 - -
Cmo01g01058 248 PRINTS Transforming protein P21 ras signature 155 168 - -
Cmo01g01058 248 TIGRFAM small_GTP: small GTP-binding protein domain 49 208 IPR005225 GO:0005525
Cmo01g01058 248 Gene3D - 44 246 IPR027417 -
Cmo01g01058 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 220 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01058 K07910 RAB18; Ras-related protein Rab-18 - csv:101216584 420.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01058 Cmo-Chr1:8497567 Cmo20g01067 Cmo-Chr20:9874195 5.19E-106 dispersed
Cmo01g01058 Cmo-Chr1:8497567 Cmo02g00640 Cmo-Chr2:3978431 9.70E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01058 Cmo_Chr01 FPKM 1.235604 1.638919 0.582566 0.83265 7.741361 7.645328 8.274197 0.806299 0.779375 0.796862