Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01060 ATGCCGTCTTCTGGTGTTTCAGCCTTGGATTCAGAAGAAGAAGGCAGGTCGGATGTGGGTAAAACAAAGGAGAACCCCAGCTTCTTCGATATATATGGAACCGATGCCAAAGCTGAGATTCTTTTCAAAACTCCTGAGTCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGGGCTTGTAACTTGGGTGCTTGCTGAAGGTTTCATGCCATCATGGGTTTTCATTAAGAATAAACCCCTGATCCCCAAAGTGGTTATGGTTTATCTCCCTGGCCTGGATGCTGCTCTGTACATGTCACAGACCAAGATACTTCCTACGTTTAAAAAATTATGCGGCAATCCGAGGGCAGTTTTAGCTCTTAGCTGTATATCAGATAGAATGCAAACAATTGATGCACTTTTGACATGTAAGGTAAAGAGAAAGAGGGATGCAAATAGTGTAGACTTAAAGAATAATTTGACGTCTGAACAAGAAAGACTTGGCCCTGAAAAAGAAACACCGATATCTATCAAACTCCCGAAGGAGTTACCTTTCCCTGTTACATATTATACGCTAACTGCAAAAGAACTGGAAGACAATGGCTATCCTTTCAATCAACCAGGTTTTATACATACACTTCCTGCTCCTATTGGATCTTCACCTTATGAAATGTTGGCGCTTGACTGTGAAATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGAAGGACAGGTTGTCCTTGACAAATTGGTAAAACCATCAAATGCAATTGTTGATTACAATACGAGGTTTAGTGGAATTACGTCTGAGATGTTAAGTCAGGTGACCACTAGTCTGGAAGATGTTCAGAAAGTTTTTTTGAATCTAGTTCACAAGGAGACCGTTCTAATTGGTCATTCACTGGAGAATGACCTGATGGCATTAAAGATCTCTCATGATCTGGTGATTGATACTGCAGTACTGTATAAGCATCCCCGTGGCGGCTCTCATAAATCTGCCCTTCGAATCCTTACCAAAAAATTTCTTTCCAGGGAGATACAACAATCTGGCAATGGCCATGATAGTATTGAAGATGCAAGAGCTACTATGGAACTTGCACTTCTTAAAATTAAACATGGACCCGAGTTCGGTTCACCTCCATCATTAATCCGGAAAAAACTACTTACTGTACTTGGTGAGAATGGAAAGACGTCTTCTTTCATTGACGATGTTTCAACAGTGAAGCGATATTCCTCGGAATCATCGCATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGAGCGAAAAAAGAGGTAATGAATGAAAGAGTACACTTCATATGGACACAATTTTCGGAATTGAATTCTTACCATAAGAAGCAAGTAGATGATGAAGAAAGATTGAATGTCAAGCTTGCAGAGCTATTATCATTACTTACATGTGATTCAAAATCTGTAAACAAGAAAAGGAACAGCCGCAAAATCTCTGTTGAACTACGGGAAATTTTGAGCCGCATGGATTACAGAATCAAGGACCTTTATACCTCGTTACCTACTAATGCTATGCTTATTGTTTGCACTGGTCACGGTGACATAGCACTTGTACAGAGATTGAGGAAAATGCTAAAGGAGCAAAGTGAAACAATGATATGCCGTGAGAAGATTGTCAAAATCTTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTCTCTGTTTTGCTTCTATAAAGCATTCATCATTACTCTAA 1731 40.09 MPSSGVSALDSEEEGRSDVGKTKENPSFFDIYGTDAKAEILFKTPESNSTLSLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMVYLPGLDAALYMSQTKILPTFKKLCGNPRAVLALSCISDRMQTIDALLTCKVKRKRDANSVDLKNNLTSEQERLGPEKETPISIKLPKELPFPVTYYTLTAKELEDNGYPFNQPGFIHTLPAPIGSSPYEMLALDCEMCVTCEGFELTRITLVDMEGQVVLDKLVKPSNAIVDYNTRFSGITSEMLSQVTTSLEDVQKVFLNLVHKETVLIGHSLENDLMALKISHDLVIDTAVLYKHPRGGSHKSALRILTKKFLSREIQQSGNGHDSIEDARATMELALLKIKHGPEFGSPPSLIRKKLLTVLGENGKTSSFIDDVSTVKRYSSESSHAFPVTSDDEALSRAKKEVMNERVHFIWTQFSELNSYHKKQVDDEERLNVKLAELLSLLTCDSKSVNKKRNSRKISVELREILSRMDYRIKDLYTSLPTNAMLIVCTGHGDIALVQRLRKMLKEQSETMICREKIVKILEELHAQAEVALCFASIKHSSLL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8511669 8522969 - CmoCh01G010600.1 Cmo01g01060 374543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01060 576 Pfam Exonuclease 219 365 IPR013520 -
Cmo01g01060 576 PANTHER LD29573P 20 557 - -
Cmo01g01060 576 SMART exoiiiendus 216 375 IPR013520 -
Cmo01g01060 576 Gene3D - 214 375 IPR036397 GO:0003676
Cmo01g01060 576 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
Cmo01g01060 576 MobiDBLite consensus disorder prediction 1 22 - -
Cmo01g01060 576 CDD REX1_like 218 367 IPR034922 -
Cmo01g01060 576 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 557 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01060 Cmo05g00314 CCT
Cmo01g01060 Cmo12g00355 CCT
Cmo01g01060 Cmo12g00355 ECH
Cmo01g01060 Cmo05g00314 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01060 Cmo-Chr1:8511669 Cmo07g00696 Cmo-Chr7:3144285 8.72E-31 dispersed
Cmo01g01060 Cmo-Chr1:8511669 Cmo09g01078 Cmo-Chr9:5842246 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01060 K14570 - csv:101215617 1011.13